View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21600_low_9 (Length: 446)
Name: NF21600_low_9
Description: NF21600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21600_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Complemental strand, 32281011 - 32280573
Alignment:
| Q |
7 |
ccttccatgaaaggcatccttgacagtttccagctagattttactgcattccatgagaacgtcttgacagagaaaaatgctgaatgacaagacctaaggt |
106 |
Q |
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| T |
32281011 |
ccttccatgaaaggcatccttgacagtttccagctagattttactgcattccatgagaacgtcttgacagagaaaaatgctgaatgacaagacctaaggt |
32280912 |
T |
|
| Q |
107 |
ttttcttgttctagagaattgagttttgtcttttgcaattcttcaactcatacgaaaagagtttgttnnnnnnncaaaactcacgtgaatacatagagta |
206 |
Q |
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| T |
32280911 |
ttttcttgttctagagaattgagttttgtcttttgcaattcttcaactcatacgaaaagactttgttaaaaaaacaaaactcacgtgaatacatagagta |
32280812 |
T |
|
| Q |
207 |
gacacttgttggtttctgcactggtcaattccaaaaagagaaattatgcagcaattggatagctttatcgattttttcccctgtagctttact-gaaatt |
305 |
Q |
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| T |
32280811 |
gacacttgttggtttctgcactggtcaattccaaaaagagaaattatgcagcaattggatagctttatcgattttttcccctgtagctttactggaaatt |
32280712 |
T |
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| Q |
306 |
gctgatatacatctgttatatacggcttgtattttatttacttctcataaatttc---tcaatgtacttttcctagatttctggg-------atatattt |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
32280711 |
gctgatatacatctgttatatacggcttgtattttatttacttctcataaatttcaattcaatgtacttttcctagatttctgggatatataatatattt |
32280612 |
T |
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| Q |
396 |
caagtaatatgacgtgaatattgattttgttttcatctc |
434 |
Q |
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|||||||||||||||||||||||||| | ||||| |||| |
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| T |
32280611 |
caagtaatatgacgtgaatattgattctattttcttctc |
32280573 |
T |
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