View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21601_high_16 (Length: 328)
Name: NF21601_high_16
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 71 - 316
Target Start/End: Complemental strand, 41638959 - 41638714
Alignment:
| Q |
71 |
gttaggactatacgacattacagtggacaaatacaaatacggcaaaaagttggatacaaaaggttgctatgtgaggttagtgtcatctcctgataatgtt |
170 |
Q |
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| T |
41638959 |
gttaggactatacgacattacagtggacaaatacaaatacggcaaaaagttggatacaaaaggttgctatgtgaggttagtgtcatctcctgataatgtt |
41638860 |
T |
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| Q |
171 |
tgcaacattctcactgactttggtggtggaaaggctggttacaaactcaactacccaacatcagtgtatcgtggtttgattaaatatatggttacccctt |
270 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41638859 |
tgcaacattctcactgactttggtggtggaaaagctggttacaaactcaactacccaacatcagtgtatcgtggtttgattaaatatatggttacccctt |
41638760 |
T |
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| Q |
271 |
tttattataccactcctatgtgtgagatgcctgatactgataccta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41638759 |
tttattataccactcctatgtgtgagatgcctgatactgataccta |
41638714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41638965 - 41639039
Alignment:
| Q |
1 |
tgttgtgtcacttgtataatacataaccctgtttctcttgtccatacatgttagtgacaccttagctcctgttag |
75 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41638965 |
tgttgtgtcacttgtataatacataaccctgtttctcttgtccatacatgttagtgacaccttagctcctgttag |
41639039 |
T |
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