View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21601_high_17 (Length: 322)
Name: NF21601_high_17
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_high_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 15659366 - 15659689
Alignment:
| Q |
1 |
attctgccaataattctgttctgtattgctcccttcaattcttcctatatgtgattcaattcctttcccnnnnnnnagctataatcccatatggaagaga |
100 |
Q |
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| T |
15659366 |
attctgccaataattatgttctgtattgctcccttcaattctgcctatatgtgattcaattcctttccctttttttagctataatcccatatggaagata |
15659465 |
T |
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| Q |
101 |
attgatgataggtgggataggcaacttcataggccattacatgctgctggccttttcttgaatcctatgttatgttatgctcctaatttcacggttgatg |
200 |
Q |
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| T |
15659466 |
attgatgataggtgggataggcaacttcataggccattacatgctgctggccttttcttgaatcctatgttacgttatgctcctaatttcacagttgatg |
15659565 |
T |
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| Q |
201 |
atgagattgtaaatggcatgtacgcatgtttgcgtagaatggttgctgatgctaaaaagag--nnnnnnnnttgatcaccaacttgaggatttcaaagcg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| || |
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| T |
15659566 |
atgagattgtaaatggcatgtacgcatgtttgcgtagaatggttgctgatgctgaaaagagaaaaaaaaaattgatcagcaacttgaggatttcaacgca |
15659665 |
T |
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| Q |
299 |
agggctggaaaatttggtgatgac |
322 |
Q |
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| T |
15659666 |
aaggctggaaaatttggtgatgac |
15659689 |
T |
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