View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21601_high_18 (Length: 316)
Name: NF21601_high_18
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_high_18 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 316
Target Start/End: Original strand, 40464458 - 40464760
Alignment:
| Q |
14 |
agactcgctagttcgatcggtaattcttttgacatgtgccttaatgaatcacctattggaatttaaattccacaccatccatgagaaaaatattggagct |
113 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40464458 |
agactcgctagtttgaccggtaattcttttgacatgtgccttaatgaatcacctattggaatttaaattccacaccatccatgagaaaaatatttgagct |
40464557 |
T |
|
| Q |
114 |
agaaagaaggttgtaccaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40464558 |
agaaagaaggttgtaccaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttct |
40464657 |
T |
|
| Q |
214 |
cctactgttttaccagtaagctgcagcatagtatataccaaattctcactgaaacactagtaaagttataaacagctttagcgcgtgtgagtgagagagt |
313 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
40464658 |
cctactgtttcaccagtaagctgcagcatagtatataacaaattatcactgaaacaatagtaaagttataaacagcttttgcgcgtgtgagggagagagt |
40464757 |
T |
|
| Q |
314 |
gat |
316 |
Q |
| |
|
||| |
|
|
| T |
40464758 |
gat |
40464760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 77801 - 77694
Alignment:
| Q |
131 |
aacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgttttaccagt |
230 |
Q |
| |
|
|||||||||| || ||||| ||||| |||| | | | ||| |||||||||||||||||||| ||||| || || || |||||||||||||||| |||||| |
|
|
| T |
77801 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagccttaacttctcctactgtttcaccagt |
77702 |
T |
|
| Q |
231 |
aagctgca |
238 |
Q |
| |
|
||||||| |
|
|
| T |
77701 |
tagctgca |
77694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 40888483 - 40888590
Alignment:
| Q |
131 |
aacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgttttaccagt |
230 |
Q |
| |
|
|||||||||| || ||||| ||||| |||| | | | ||| |||||||||||||||||||| ||||| || || || |||||||||||||||| |||||| |
|
|
| T |
40888483 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagccttaacttctcctactgtttcaccagt |
40888582 |
T |
|
| Q |
231 |
aagctgca |
238 |
Q |
| |
|
||||||| |
|
|
| T |
40888583 |
tagctgca |
40888590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 21626732 - 21626639
Alignment:
| Q |
128 |
accaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgt |
221 |
Q |
| |
|
||||||||||||| || ||||| |||||||||| ||| ||| |||||||| |||||||||||| | |||||||| ||||||||||| ||||| |
|
|
| T |
21626732 |
accaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcatgcctgctactgccttcacttctcccactgt |
21626639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 28270720 - 28270827
Alignment:
| Q |
131 |
aacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgttttaccagt |
230 |
Q |
| |
|
|||||||||| || ||||| ||||| |||| ||| ||| || || |||||||||||||| || ||||| ||||| |||||||| || |||| |||||| |
|
|
| T |
28270720 |
aacctggtaaggcaataaaagcatctgaatgcttagccatctctgccttcctttgatgcatatctgctacagcttttacttctcccaccgtttcaccagt |
28270819 |
T |
|
| Q |
231 |
aagctgca |
238 |
Q |
| |
|
||||||| |
|
|
| T |
28270820 |
tagctgca |
28270827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 25026912 - 25026961
Alignment:
| Q |
163 |
ctagacatttcagctttcctttgatgcatgtcagctactgctttcacttc |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||| ||| ||||||| |
|
|
| T |
25026912 |
ctagccatttcagctttcctttgatgcatatcagatacagctctcacttc |
25026961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University