View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21601_high_3 (Length: 566)
Name: NF21601_high_3
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_high_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 32056522 - 32057061
Alignment:
| Q |
1 |
acataaacaccgataataatttgaaagaatgacataattgaacgtaattacctgcgtcggtgtgtcggacgctaatacatgttggacattcaacacccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||| |
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| T |
32056522 |
acataaacaccgataataatttgaaagaatgacataattgaacgtaattacctgcgtcag--------acgctaatacatgttggacattcaacacgcct |
32056613 |
T |
|
| Q |
101 |
tcaacagaatgaattcactcaaaatcaatttttatcactatatgcttagaaattcaaatcattttgtttcttacacatacccagctgaattctttcacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
32056614 |
tcaacagaatgaattcactcaaaatcaatttttatcactatatgcttagaaattcaaatcattttgtttcttacacatacccagctgaattcttttacta |
32056713 |
T |
|
| Q |
201 |
aatcaatcatctagtcagaaacaaatattgcaattttacagaattgaattaaactttatagttaaaattctgttacacttaaacatgttaccactatgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
32056714 |
aatcaatcatctagtcagaaacaaatattgcaattttacagaattgaattaaattttatagttaaaattctgttacact-aaacatgttactactatgtt |
32056812 |
T |
|
| Q |
301 |
gtttgaggcaatgaaatgaaacaaacatcttaccagaataaccggttcggcctttttgggaagttctggtacaagaaaagaaagattcgtatccatcaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32056813 |
gtttgaggcaatgaaatgaaacaaacatcttaccagaataaccggttcggcctttttgggaagttctggtacaagaaaagaaagattcgtatccatcaac |
32056912 |
T |
|
| Q |
401 |
cataaccaaatccgctgtaacatcttgcctactaagttttgtctcctgaaagcaaagaatgtcagcgtcgaatgaattaagaagattccgaagagaaccg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32056913 |
cataaccaaatccgctgtaacatcttgcctactaagttttgtctcctgaaagcaaagaatgtcagcgtcgaatgaattaagaagattccgaagagaaccg |
32057012 |
T |
|
| Q |
501 |
aactgagttatgcgttgtctcaacccgttcacgttgtaactcactatct |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32057013 |
aactgagttatgcgttgtctcaacccgttcacgttgtaactcactatct |
32057061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 38749621 - 38749578
Alignment:
| Q |
7 |
acaccgataataatttgaaagaatgacataattgaacgtaatta |
50 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || ||||||| |
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|
| T |
38749621 |
acaccgataataatttgaaaaaatgacataattcaatgtaatta |
38749578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 4344743 - 4344775
Alignment:
| Q |
7 |
acaccgataataatttgaaagaatgacataatt |
39 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
4344743 |
acaccgataataatttgaaaaaatgacataatt |
4344775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 2493472 - 2493431
Alignment:
| Q |
7 |
acaccgataataatttgaaagaatgacataattgaacgtaat |
48 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| ||||| |
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|
| T |
2493472 |
acaccgataataatttgacaaaatgacataattgaatgtaat |
2493431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 27096059 - 27096018
Alignment:
| Q |
7 |
acaccgataataatttgaaagaatgacataattgaacgtaat |
48 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| ||||| |
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|
| T |
27096059 |
acaccgataataatttgacaaaatgacataattgaatgtaat |
27096018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 30300946 - 30300914
Alignment:
| Q |
105 |
cagaatgaattcactcaaaatcaatttttatca |
137 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
30300946 |
cagaatgaattcactcaaaatcaaattttatca |
30300914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 25317138 - 25317170
Alignment:
| Q |
7 |
acaccgataataatttgaaagaatgacataatt |
39 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
25317138 |
acaccgataataatttgaaaaaatgacataatt |
25317170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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