View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21601_high_7 (Length: 447)
Name: NF21601_high_7
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 45565738 - 45566153
Alignment:
| Q |
1 |
tctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgttgcgccacaaccaaagtcctatcatctttcttcaagtttgtaaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45565738 |
tctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgttgcgccacaaccaaagtcctatcatctttcttcaagtttgtaaaag |
45565837 |
T |
|
| Q |
101 |
tattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtgtcaccatccttaagccaaatcacctttgctatttgtttccaaaatgc |
200 |
Q |
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| T |
45565838 |
tattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtatcaccatccttaagccaaatcacctttgctatttgtttccaaaatgc |
45565937 |
T |
|
| Q |
201 |
ttctgcttgtgccaataatcctcccattcaaatatgtacctccttagagcgcccaatttgggaagcttgcacgctgcccctaaatctatctaactcatcc |
300 |
Q |
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| T |
45565938 |
ttctgcttgtgccaataatcctctcattcaaatatgtacctccttagagcgcgcaatttgggaagcttgcacgctgcccctaaatctctctaactcatcc |
45566037 |
T |
|
| Q |
301 |
cgacattcatcaatggaaacttgatacttactttggagctttcttcccggttcgttcatatcctctgtacaattcttcagcctgagcaaaatccctccat |
400 |
Q |
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| T |
45566038 |
cgacattcatcaatggaaactcgatacttactttggagctttcttccccgttcgttcatatcctctgtacaattcttcagcctgagcaaaatccctccat |
45566137 |
T |
|
| Q |
401 |
cctgacttttctccta |
416 |
Q |
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| T |
45566138 |
cctgacttttctccta |
45566153 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 8179388 - 8179449
Alignment:
| Q |
154 |
tcaccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaa |
215 |
Q |
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||||||||||| |||||||||||||| ||| |||| |||||||| |||||| |||||||||| |
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| T |
8179388 |
tcaccatccttcagccaaatcaccttagctctttgcttccaaaacgcttcttcttgtgccaa |
8179449 |
T |
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