View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21601_low_1 (Length: 1174)

Name: NF21601_low_1
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21601_low_1
NF21601_low_1
[»] chr4 (10 HSPs)
chr4 (735-1136)||(30890399-30890829)
chr4 (631-678)||(17696393-17696440)
chr4 (632-680)||(12388082-12388130)
chr4 (632-679)||(16482296-16482343)
chr4 (632-678)||(28951118-28951165)
chr4 (632-678)||(39133084-39133131)
chr4 (427-474)||(54097288-54097335)
chr4 (639-680)||(9884951-9884992)
chr4 (437-474)||(9884956-9884993)
chr4 (632-681)||(10130880-10130929)
[»] chr7 (5 HSPs)
chr7 (709-1025)||(523158-523465)
chr7 (382-417)||(523077-523112)
chr7 (632-678)||(21443863-21443911)
chr7 (636-680)||(32200094-32200139)
chr7 (437-474)||(35097782-35097819)
[»] chr8 (3 HSPs)
chr8 (638-680)||(24177718-24177760)
chr8 (632-680)||(25653700-25653749)
chr8 (437-474)||(39302134-39302171)
[»] chr2 (5 HSPs)
chr2 (639-679)||(36795153-36795193)
chr2 (446-481)||(41100704-41100739)
chr2 (632-678)||(18048815-18048861)
chr2 (632-677)||(38358266-38358312)
chr2 (632-676)||(19272662-19272707)
[»] chr1 (3 HSPs)
chr1 (632-681)||(7611436-7611487)
chr1 (639-679)||(20158986-20159026)
chr1 (437-474)||(25170957-25170994)
[»] chr6 (2 HSPs)
chr6 (450-485)||(30246070-30246105)
chr6 (638-676)||(10343499-10343537)
[»] chr5 (4 HSPs)
chr5 (637-676)||(20627959-20627998)
chr5 (639-678)||(24802030-24802069)
chr5 (639-677)||(16435749-16435787)
chr5 (632-677)||(21127487-21127532)
[»] chr3 (6 HSPs)
chr3 (632-679)||(26932536-26932583)
chr3 (639-677)||(31073994-31074032)
chr3 (636-677)||(13439898-13439939)
chr3 (437-474)||(13468362-13468399)
chr3 (632-677)||(35359654-35359699)
chr3 (437-474)||(35359660-35359697)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 735 - 1136
Target Start/End: Complemental strand, 30890829 - 30890399
Alignment:
Q  735 agaataatatccaagcaaagtcacaagccctatcagaaacctttaaccttatgtcattgggagcggtcctcaatcactatcacagtagttcttctc---- 830  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        
T  30890829 agaataatatccaagcaaagtcacaagccctatcacaaacctttaaccttatgtcattgggagcggtcctcaatcactatcacagtagctcttctcttca 30890730  T
Q  831 --acaattacgttgttgaaggggtaaaatattccatgggttagatcatcactcaaatatttaaccaccgctcaatttatttccttgttcatgaatcctca 928  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30890729 agacaattacgttgttgaaggggtaaaatattccatgggttagatcatcactcaaatatttaaccaccgctcaatttatttccttgtttatgaatcctca 30890630  T
Q  929 cggcatctccaaggttagtctctcaagtggttctcatatgctccatctcatc---------------tcattttagtaatacttgattaatttactgaga 1013  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||| |||    
T  30890629 cggcatctccaatgttagtctctcaagtggttctcatatgctccatctcatctcatctcatctcatctcattttagtaatacttgattaatttactcaga 30890530  T
Q  1014 tgattgattcctcaaagtgaa-tttaagtgacttcacatgtcagactaaataggaaaacccacaaaatagtggctttctgatca-------agttttagt 1105  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||| ||||       |||||||||    
T  30890529 tgattgattcctcaaaatgaattttaagtgacttcacatgtcagactaaataggaaaacccaccaaatagtgcttttctaatcaaagttttagttttagt 30890430  T
Q  1106 ctttaagtagttcccatatgctctaatcaag 1136  Q
    |||||||| ||||||||||||||||||||||    
T  30890429 ctttaagtggttcccatatgctctaatcaag 30890399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 631 - 678
Target Start/End: Original strand, 17696393 - 17696440
Alignment:
Q  631 caaaccagaaatgacctatattacagggataaaacacttttaaccctt 678  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||    
T  17696393 caaaccagaaatgacctatattacaggggtaaaacactattaaccctt 17696440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 632 - 680
Target Start/End: Complemental strand, 12388130 - 12388082
Alignment:
Q  632 aaaccagaaatgacctatattacagggataaaacacttttaaccctttt 680  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||||||||    
T  12388130 aaaccggaaatgacctatattacaggggtaaaacactattaaccctttt 12388082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 632 - 679
Target Start/End: Original strand, 16482296 - 16482343
Alignment:
Q  632 aaaccagaaatgacctatattacagggataaaacacttttaacccttt 679  Q
    ||||||||||||||||||||||||||| |||||  || ||||||||||    
T  16482296 aaaccagaaatgacctatattacaggggtaaaaatctattaacccttt 16482343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 632 - 678
Target Start/End: Original strand, 28951118 - 28951165
Alignment:
Q  632 aaaccagaaatgacctatattaca-gggataaaacacttttaaccctt 678  Q
    |||||||||||||||||||||| | ||| |||||||||||||||||||    
T  28951118 aaaccagaaatgacctatattatagggggtaaaacacttttaaccctt 28951165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 632 - 678
Target Start/End: Complemental strand, 39133131 - 39133084
Alignment:
Q  632 aaaccagaaatgacctatattacaggg-ataaaacacttttaaccctt 678  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  39133131 aaaccggaaatgacctatattacagggtataaaacactcttaaccctt 39133084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 427 - 474
Target Start/End: Complemental strand, 54097335 - 54097288
Alignment:
Q  427 tttttctttaggttaaaggtgttttacccctgtaatataggccatttt 474  Q
    ||||| || ||||||| |||||||||||||||||||||||| ||||||    
T  54097335 ttttttttaaggttaatggtgttttacccctgtaatataggtcatttt 54097288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 639 - 680
Target Start/End: Complemental strand, 9884992 - 9884951
Alignment:
Q  639 aaatgacctatattacagggataaaacacttttaaccctttt 680  Q
    |||||||||||||||||||| ||||||||  |||||||||||    
T  9884992 aaatgacctatattacaggggtaaaacaccattaaccctttt 9884951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 474
Target Start/End: Original strand, 9884956 - 9884993
Alignment:
Q  437 ggttaaaggtgttttacccctgtaatataggccatttt 474  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  9884956 ggttaatggtgttttacccctgtaatataggtcatttt 9884993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 632 - 681
Target Start/End: Original strand, 10130880 - 10130929
Alignment:
Q  632 aaaccagaaatgacctatattacagggataaaacacttttaaccctttta 681  Q
    ||||| ||||||| |||||||||| || |||||||| |||||||||||||    
T  10130880 aaaccggaaatgagctatattacatgggtaaaacacctttaaccctttta 10130929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 4e-75; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 709 - 1025
Target Start/End: Original strand, 523158 - 523465
Alignment:
Q  709 attgtttctttgacttccatgttaggagaataatatccaagcaaagtcacaagccctatcagaaacctttaaccttatgtcattgggagcgg-tcctcaa 807  Q
    |||| ||||||||||||||||||||||||||| | | |||| || ||||||| |||||||| |||| ||       || |||||||||  || |||||||    
T  523158 attgcttctttgacttccatgttaggagaata-tcttcaagaaacgtcacaaaccctatcacaaacatt-------atatcattgggatagggtcctcaa 523249  T
Q  808 tcactat--cacagtagttcttctc-acaattacgttgttgaaggggtaaaatattccatgggttagatcatcactcaaatatttaaccaccgctcaatt 904  Q
    |||||||  |||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  523250 tcactatatcacagtaggtcttcaagacaattacgttgttgaaggggtaaaatattccatgggttagatcatcactcaaatatttaaccaccgctcaatt 523349  T
Q  905 tatttccttgttcatgaatcctcacggcatctccaaggttagtctctcaagtggttctcatatgctccatctcatctcattttagtaatacttgattaat 1004  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||| |||||||||      |||||||||||| ||||||||||||||    
T  523350 tatttccttgttcatgaatcctcacggcatctccaaggctagcctcttaagtgattcccatatgctc-----tatctcattttagcaatacttgattaat 523444  T
Q  1005 ttactgagatgattgattcct 1025  Q
    |||||   |||||||||||||    
T  523445 ttactctaatgattgattcct 523465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 523077 - 523112
Alignment:
Q  382 tcacaataaaatagtttgtacaaggattgttgtaat 417  Q
    |||||||| |||||||||||||||||||||||||||    
T  523077 tcacaatagaatagtttgtacaaggattgttgtaat 523112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 632 - 678
Target Start/End: Complemental strand, 21443911 - 21443863
Alignment:
Q  632 aaaccagaaatgacctatattaca--gggataaaacacttttaaccctt 678  Q
    |||||||||||||| |||||||||  ||||||||||||| |||||||||    
T  21443911 aaaccagaaatgacttatattacagggggataaaacactattaaccctt 21443863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 636 - 680
Target Start/End: Original strand, 32200094 - 32200139
Alignment:
Q  636 cagaaatgacctatattaca-gggataaaacacttttaaccctttt 680  Q
    |||||||||||||||||||| ||| ||||||||| |||||||||||    
T  32200094 cagaaatgacctatattacagggggtaaaacactgttaaccctttt 32200139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 35097819 - 35097782
Alignment:
Q  437 ggttaaaggtgttttacccctgtaatataggccatttt 474  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  35097819 ggttaatggtgttttacccctgtaatataggtcatttt 35097782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 638 - 680
Target Start/End: Complemental strand, 24177760 - 24177718
Alignment:
Q  638 gaaatgacctatattacagggataaaacacttttaaccctttt 680  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  24177760 gaaatgacctatattacaggggtaaaacactattaaccctttt 24177718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 632 - 680
Target Start/End: Complemental strand, 25653749 - 25653700
Alignment:
Q  632 aaaccagaaatgacctatattaca-gggataaaacacttttaaccctttt 680  Q
    |||||| ||||||||||||||||| ||| ||||||||| |||||||||||    
T  25653749 aaaccaaaaatgacctatattacagggggtaaaacactattaaccctttt 25653700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 39302171 - 39302134
Alignment:
Q  437 ggttaaaggtgttttacccctgtaatataggccatttt 474  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  39302171 ggttaatggtgttttacccctgtaatataggtcatttt 39302134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 639 - 679
Target Start/End: Complemental strand, 36795193 - 36795153
Alignment:
Q  639 aaatgacctatattacagggataaaacacttttaacccttt 679  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  36795193 aaatgacctatattacaggggtaaaacactattaacccttt 36795153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 446 - 481
Target Start/End: Original strand, 41100704 - 41100739
Alignment:
Q  446 tgttttacccctgtaatataggccattttcaatttt 481  Q
    |||||||||||||||||||||| |||||||||||||    
T  41100704 tgttttacccctgtaatataggtcattttcaatttt 41100739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 632 - 678
Target Start/End: Complemental strand, 18048861 - 18048815
Alignment:
Q  632 aaaccagaaatgacctatattacagggataaaacacttttaaccctt 678  Q
    |||||| |||||||||||||||||||| |||| |||| |||||||||    
T  18048861 aaaccaaaaatgacctatattacaggggtaaagcactattaaccctt 18048815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 632 - 677
Target Start/End: Complemental strand, 38358312 - 38358266
Alignment:
Q  632 aaaccagaaatgacctatattacaggga-taaaacacttttaaccct 677  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  38358312 aaaccagaaatgacctttattacagggagtaaaacactattaaccct 38358266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 632 - 676
Target Start/End: Complemental strand, 19272707 - 19272662
Alignment:
Q  632 aaaccagaaatgacctatattaca-gggataaaacacttttaaccc 676  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||||    
T  19272707 aaaccggaaatgacctatattacaggggataaaacactattaaccc 19272662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 632 - 681
Target Start/End: Original strand, 7611436 - 7611487
Alignment:
Q  632 aaaccagaaatgacctatattacagggat--aaaacacttttaaccctttta 681  Q
    ||||||||||||||||||||||||||| |  |||||||| ||||||||||||    
T  7611436 aaaccagaaatgacctatattacaggggtgaaaaacactattaaccctttta 7611487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 639 - 679
Target Start/End: Original strand, 20158986 - 20159026
Alignment:
Q  639 aaatgacctatattacagggataaaacacttttaacccttt 679  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  20158986 aaatgacctatattacaggggtaaaacactattaacccttt 20159026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 474
Target Start/End: Original strand, 25170957 - 25170994
Alignment:
Q  437 ggttaaaggtgttttacccctgtaatataggccatttt 474  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  25170957 ggttaatggtgttttacccctgtaatataggtcatttt 25170994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 450 - 485
Target Start/End: Complemental strand, 30246105 - 30246070
Alignment:
Q  450 ttacccctgtaatataggccattttcaatttttttc 485  Q
    |||||||||||||||||| |||||||||||||||||    
T  30246105 ttacccctgtaatataggtcattttcaatttttttc 30246070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 638 - 676
Target Start/End: Complemental strand, 10343537 - 10343499
Alignment:
Q  638 gaaatgacctatattacagggataaaacacttttaaccc 676  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  10343537 gaaatgacctatattacaggggtaaaacactattaaccc 10343499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 637 - 676
Target Start/End: Complemental strand, 20627998 - 20627959
Alignment:
Q  637 agaaatgacctatattacagggataaaacacttttaaccc 676  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  20627998 agaaatgacctatattacaggggtaaaacactattaaccc 20627959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 639 - 678
Target Start/End: Original strand, 24802030 - 24802069
Alignment:
Q  639 aaatgacctatattacagggataaaacacttttaaccctt 678  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  24802030 aaatgacctatattacaggggtaaaacactattaaccctt 24802069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 639 - 677
Target Start/End: Complemental strand, 16435787 - 16435749
Alignment:
Q  639 aaatgacctatattacagggataaaacacttttaaccct 677  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  16435787 aaatgacctatattacaggggtaaaacactgttaaccct 16435749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 632 - 677
Target Start/End: Original strand, 21127487 - 21127532
Alignment:
Q  632 aaaccagaaatgacctatattacagggataaaacacttttaaccct 677  Q
    ||||||||||||||  ||||||||||| ||||||||| ||||||||    
T  21127487 aaaccagaaatgactaatattacaggggtaaaacactattaaccct 21127532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 632 - 679
Target Start/End: Original strand, 26932536 - 26932583
Alignment:
Q  632 aaaccagaaatgacctatattacagggataaaacacttttaacccttt 679  Q
    ||||| |||||||||||||||||| || ||||||||| ||||||||||    
T  26932536 aaaccggaaatgacctatattacaagggtaaaacactattaacccttt 26932583  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 639 - 677
Target Start/End: Original strand, 31073994 - 31074032
Alignment:
Q  639 aaatgacctatattacagggataaaacacttttaaccct 677  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  31073994 aaatgacctatattacaggggtaaaacactattaaccct 31074032  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 636 - 677
Target Start/End: Original strand, 13439898 - 13439939
Alignment:
Q  636 cagaaatgacctatattacagggataaaacacttttaaccct 677  Q
    |||||||||| |||||||||||| ||||||||| ||||||||    
T  13439898 cagaaatgacatatattacaggggtaaaacactattaaccct 13439939  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 13468399 - 13468362
Alignment:
Q  437 ggttaaaggtgttttacccctgtaatataggccatttt 474  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  13468399 ggttaatggtgttttacccctgtaatataggtcatttt 13468362  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 632 - 677
Target Start/End: Original strand, 35359654 - 35359699
Alignment:
Q  632 aaaccagaaatgacctatattacagggataaaacacttttaaccct 677  Q
    |||||| |||||||||||||||||||| ||||||||  ||||||||    
T  35359654 aaaccaaaaatgacctatattacaggggtaaaacaccattaaccct 35359699  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 35359697 - 35359660
Alignment:
Q  437 ggttaaaggtgttttacccctgtaatataggccatttt 474  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  35359697 ggttaatggtgttttacccctgtaatataggtcatttt 35359660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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