View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21601_low_10 (Length: 396)
Name: NF21601_low_10
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_low_10 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 21 - 396
Target Start/End: Complemental strand, 2105914 - 2105530
Alignment:
| Q |
21 |
ctaaactcacgaggacactttttcatatgtttgatatgttttattactcttgaacataattgaacttgcctccaaaaattattctaataaggtcaaacta |
120 |
Q |
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| T |
2105914 |
ctaaactcacgaggacactttttcatatgtttgatatgttttattactctcgaacataattgaacttgcctccaaaaattattctaataaggtcaaacta |
2105815 |
T |
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| Q |
121 |
gaaactaaagtctttatactgagattgattctacattcaaatttattgtttaactcactttacatgaagtcatcgaatgataaaccattttacc------ |
214 |
Q |
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| T |
2105814 |
gaaactaaagtctttatactgagattgattctacattcaaatttattgtttaactcactttacatgaagtcatcgaatgataaaccattttaccttcgga |
2105715 |
T |
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| Q |
215 |
--ccaactatattctatcaatttaacataaatacaattaaaccaaaattaatttttatcacaacataatcaaacattgacaaagtatatgtgacattttg |
312 |
Q |
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| T |
2105714 |
cttcaactatattctatcaatttaacataaatacaattaaaccaaaattaatttttatcacaacataatcaaacattgacaaagtatatgtgacattttg |
2105615 |
T |
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| Q |
313 |
agcatgaaggatttttcatgctatgctatcccagatttttcaacaatttatagaaac-aaaaaatataaaataaaccgacttact |
396 |
Q |
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| T |
2105614 |
agcatgaaggatttttcatgctatgctatccaagatttttcaacaatttatagaaacaaaaaaatataaaataaaccgacttact |
2105530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 2096620 - 2096567
Alignment:
| Q |
216 |
caactatattctatcaatttaacataaatacaattaaaccaaaattaattttta |
269 |
Q |
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|||||| ||||||||||||| | ||||||||||||||| |||||||| |||||| |
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| T |
2096620 |
caactacattctatcaattttatataaatacaattaaatcaaaattagttttta |
2096567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 181
Target Start/End: Original strand, 882738 - 882767
Alignment:
| Q |
152 |
tacattcaaatttattgtttaactcacttt |
181 |
Q |
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| T |
882738 |
tacattcaaatttattgtttaactcacttt |
882767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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