View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21601_low_11 (Length: 395)
Name: NF21601_low_11
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 9549007 - 9549211
Alignment:
| Q |
1 |
actttccgtctaatttcattgtagttagtgattcaaggcgtcaatgaaacattgtgaggtacgcacatataacttaattatcatctcatatgatctattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9549007 |
actttccgtctaatttcattgtagttagtgattcaaggcgtcaatgaaacattgtgaggtacgcacatataacttaattatcatctcatatgatctattc |
9549106 |
T |
|
| Q |
101 |
aatcttgttatgttggagtaatataaaatctaacaaaataacttattagttttatttgatggggaattaacac--aaacaaaatatcaaaagaacatgtt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9549107 |
aatcttgttatgttggagtaatataaaatctaacaaaataacttattagttttatttgatggggaattaacacataaacaaaatatcaaaagaacatgtt |
9549206 |
T |
|
| Q |
199 |
ataga |
203 |
Q |
| |
|
||||| |
|
|
| T |
9549207 |
ataga |
9549211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University