View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21601_low_16 (Length: 339)
Name: NF21601_low_16
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 45201230 - 45201535
Alignment:
| Q |
20 |
tgtgggttttgttttgactttgtttatgccattaaattgtttcatgcatgtggcaattcattgtccttagatctaactacactacatttgnnnnnnncaa |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45201230 |
tgtgggttttgttttgactttgttcatgccattaaattgtttcatgcatgtggcaattcattgtccttagatctaactacactacatttgaaaaaaacaa |
45201329 |
T |
|
| Q |
120 |
cgtgcattgtaatagctaattgacacatattaagactaacaaccatactcgtggccataagctataaattcgtgatataaacattttgtagagatgttgc |
219 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45201330 |
cgtgcattgtaataggtaattgacacatattaagactaacaaccatactcgtggccataagctataaattcgtgatataaacattttgtagagatgttgc |
45201429 |
T |
|
| Q |
220 |
ccaattaattttcttcattttgtacaaatttatgcacttacctagctcaattgtgataatgaccgtattgttaaaccagacacnnnnnnncaatctagaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45201430 |
ccaattaattttcttcattttgtacaaatttatgcacttacctagctcaattgtgataatgaccgtattgttaaaccagacactttttttcaatctagaa |
45201529 |
T |
|
| Q |
320 |
tctcgt |
325 |
Q |
| |
|
|||||| |
|
|
| T |
45201530 |
tctcgt |
45201535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University