View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21601_low_2 (Length: 906)
Name: NF21601_low_2
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 332 - 889
Target Start/End: Complemental strand, 16744461 - 16743900
Alignment:
| Q |
332 |
gatatccataaaaagcttaaaacccctcttannnnnnnnn-gttttatttcatgtttatagtacactcccaaaacctaacatgaaatttaaaacaactta |
430 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16744461 |
gatatccataaaaagcttaaaacccctcttatttttgttttgttttatttcatgtttatagtacactcccaaaacctaacatgaaatttaaaacaactta |
16744362 |
T |
|
| Q |
431 |
aatatattttatttataatttaaagtaaataacgtccaagcaaaaactaacattttagacagagcctgtttcctccaccctctcacaaaacatgcaaaac |
530 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| |
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| T |
16744361 |
aatatattttatttataatttaaagtaaataacgtccggccaaaagctaacattttagacggagcccgtttcctccaccctcccacaaaacatgcaaaac |
16744262 |
T |
|
| Q |
531 |
ttcctt-tgtctgcattcaaaacacccataatagctaggttcacccttg-tcggaattcggtcaagtaacaacgttcaagcaaaagctaacactttagac |
628 |
Q |
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||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16744261 |
ttctgtctgttcgcattcaaaacacccataatagctaggttcacccttgatcggaattcggtcaagtaacaacgttcaagcaaaagctaacactttagac |
16744162 |
T |
|
| Q |
629 |
ggagcgcgacacttccaaagaccaccaaacacacactcctcatctccggataaattatcctcaatcaaaaatagtctctcaagtagcttacgacatgagt |
728 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
16744161 |
ggagcgcgacacttccaaagaccaccaaacacacactcctcatctccggataaattatcctcaatcaaaaatagtctctcaagtagcttacgatacgagt |
16744062 |
T |
|
| Q |
729 |
tcaccgagaaacctctccctccct-cggcctccacaaccacttgtctctcccttctcccaacaacaccccttcgcacacaaagagctctcttcgccacac |
827 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |
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| T |
16744061 |
tcaccgagaaagctctccctccctccggcctccacaaccacttgtctctcccttctcccaacaacgccccttcccacacaaagagttctcttcgccacac |
16743962 |
T |
|
| Q |
828 |
caaattccaaatcccctctccctctctaccattcaccaattcccacacactacaatccatat |
889 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
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|
| T |
16743961 |
caaattccaactcccctctccctctctaccattcaccacttcccccacactacaattcatat |
16743900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 16744776 - 16744524
Alignment:
| Q |
18 |
gctaagaagtctcaagtttttgtttttgacctgtctatgttaaatgtgacttgctattgttatctttattgggaattttttaacagcaaacacataaatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16744776 |
gctaagaagtctcaagtttttgtttttgacctgtctatgttaaatgtgacttgctattgttatctttattgggaattttttaacagcaaacacataaatt |
16744677 |
T |
|
| Q |
118 |
gttattgataataagaggaaatcagtacaagtgactgaattctcatagtgaatcaaag---------tacacttccccatccatttctgaaaattggttc |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16744676 |
gttattgataataagaggaaatcagtacaagtgactgaattctcatagtgaatcaaagtacaagtactacacttccccatccatttctgaaaattggttc |
16744577 |
T |
|
| Q |
209 |
taaagatatggtgtttagatatggtggtcccaagtttttaccaaaaaccaactccaccacaattgc |
274 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16744576 |
taa-------------agatatggtggtcccaagtttttaccaaaaaccaactccaccacaattgc |
16744524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 542 - 800
Target Start/End: Complemental strand, 21018826 - 21018569
Alignment:
| Q |
542 |
gcattcaaaacacccataatagctaggttcacccttgtcggaattcggtcaagtaacaacgttcaagcaaaagctaacactttagacggagcgcgacact |
641 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||| |||| || |||||||||||||| || |||||||||||||||||||||||||| | |||||| |
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| T |
21018826 |
gcattcaaaacacccctaatcgctagattcacccttatcggtatacggtcaagtaacaaagtccaagcaaaagctaacactttagacggcacccgacacc |
21018727 |
T |
|
| Q |
642 |
tccaaagaccaccaaacacacactcctcatctccggataaattatcctcaatcaaaaatagtctctcaagtagcttacgacatgagttcaccgagaaacc |
741 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| ||||||||||| | || |||||||| || |||||||| |||||| ||| ||||||||||||||| | |
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|
| T |
21018726 |
tccaaagatcaccaaacacacgctcctcatcttcggataaattaacatcgatcaaaaacagcctctcaagaagcttataacacgagttcaccgagaaaac |
21018627 |
T |
|
| Q |
742 |
tctccctccctcggcctccacaaccacttgtctctcccttctcccaacaacaccccttc |
800 |
Q |
| |
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||||||||| |||||||||| |||| | ||||||||||| |||| |||||||||||| |
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|
| T |
21018626 |
tctccctcctccggcctccacccccac-tctctctcccttcccccaccaacaccccttc |
21018569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 802 - 881
Target Start/End: Complemental strand, 21018531 - 21018452
Alignment:
| Q |
802 |
cacacaaagagctctcttcgccacaccaaattccaaatcccctctccctctctaccattcaccaattcccacacactaca |
881 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||| |||||||||||||| ||| || |||| ||||||||| |
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|
| T |
21018531 |
cacacaaataggtctcttcgccacaccaaattccacctcccccctccctctctaccactcaacacctcccccacactaca |
21018452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 559 - 685
Target Start/End: Original strand, 2517049 - 2517175
Alignment:
| Q |
559 |
aatagctaggttcacccttgtcggaattcggtcaagtaacaacgttcaagcaaaagctaacactttagacggagcgcgacacttccaaagaccaccaaac |
658 |
Q |
| |
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||||||||| |||||||| |||||||| |||||||||||||| || ||||| || |||| | ||||| ||||||| | || ||||| ||| ||||||||| |
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| T |
2517049 |
aatagctagattcaccctcgtcggaatgcggtcaagtaacaatgtccaagcgaatgctagccctttaaacggagccccactcttccgaaggccaccaaac |
2517148 |
T |
|
| Q |
659 |
acacactcctcatctccggataaatta |
685 |
Q |
| |
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||| |||||| ||| ||||||||||| |
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|
| T |
2517149 |
acaagctcctcgtcttcggataaatta |
2517175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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