View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21601_low_24 (Length: 275)
Name: NF21601_low_24
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 39226148 - 39225903
Alignment:
| Q |
17 |
atgaaaataatatgattattagaaaactgttacatcaactaatacattaaaatttatatagtcaattagaccacccttaataaaaagct-----atacaa |
111 |
Q |
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| T |
39226148 |
atgaaaataatatgattattagaatattgttacatcaactaatacattaaaatttatatagtcaattagaccgcccttaaaaaaaaagtcaatcatacaa |
39226049 |
T |
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| Q |
112 |
caaatatttctttgtttgacgccatttgtacacatggaaacggcagatgctgaattcaaagtaaagttagaataagaagggccaatactgaatttaagaa |
211 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39226048 |
gaaatatttctttgtttgaggccatttgtacacgtggaaacggcagatgctgaattcaaagtaaagttagaataagaagggccaatactgaatttaagaa |
39225949 |
T |
|
| Q |
212 |
tgaaaataggatagagacatgaacgttgagtactagtagtagtatt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39225948 |
tgaaaataggatagagacatgaacgttgagtactagtagtagtatt |
39225903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 39197423 - 39197271
Alignment:
| Q |
106 |
atacaacaaatatttctttgtttgacgccatttgtacacatggaaacggcagatgctgaattcaaagtaaagttagaataagaagggccaa--tactgaa |
203 |
Q |
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|||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39197423 |
atacaagaaatatctctttgtttgaggccatttgtacacatggaaacggcagacactgaattcaaagtaaagttagaataagaagggccaatgtactgaa |
39197324 |
T |
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| Q |
204 |
tttaagaatgaaaataggatagagacatgaacgttgagtactagtagtagtatt |
257 |
Q |
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| T |
39197323 |
tttaagaatgaacataggactcagacatgaacattgggtccta-tagtagtatt |
39197271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 39218730 - 39218615
Alignment:
| Q |
124 |
tgtttgacgccatttgtacacatgg-aaacggcagatgctgaattcaaagtaaagttagaataagaagggccaa--tactgaatttaagaatgaaaatag |
220 |
Q |
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||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
39218730 |
tgtttgaggccatttgtacacatgggaaacggcagatactgaattcaaagtaaagttagaataagaagggccaatgtactgaatttaagaatgaacatag |
39218631 |
T |
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| Q |
221 |
gatagagacatgaacg |
236 |
Q |
| |
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|| |||||||||||| |
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| T |
39218630 |
gactgagacatgaacg |
39218615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 42395660 - 42395705
Alignment:
| Q |
29 |
tgattattagaaaactgttacatcaactaatacattaaaatttata |
74 |
Q |
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||||||||||| || ||||||||||| || |||||||||||||||| |
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| T |
42395660 |
tgattattagagaattgttacatcaagtagtacattaaaatttata |
42395705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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