View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21601_low_25 (Length: 262)
Name: NF21601_low_25
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 8337446 - 8337200
Alignment:
| Q |
1 |
gatttgtggaagctgtcagttcgagtcaaagataaatggacagtagtgaaggatggaaaagaacatttggaattgctgattgttgatgctaaggtatggg |
100 |
Q |
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| T |
8337446 |
gatttgtggaagctgtcagttcgagtcaaagataaatggacagcagtgaaggatggaaaagaacatttggaattgctgattgttgatgctaaggtatggg |
8337347 |
T |
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| Q |
101 |
agataacatttgaacataataccctactgctattttttggtcactcattgattttacttttgtttatgaaaacaaannnnnnnnngttacttattcactt |
200 |
Q |
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| T |
8337346 |
acataacatttgaacataataccctactgctattttttggtcactcattggttttacttttgtttatgaaaacaaa-tttattttgttacttattcactt |
8337248 |
T |
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| Q |
201 |
taagcttattttacaatattagggccatgatattcaactactcattcc |
248 |
Q |
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| T |
8337247 |
taagcttattttaccatattagggccatgatattcaactactcattcc |
8337200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 10234724 - 10234550
Alignment:
| Q |
1 |
gatttgtggaagctgtcagttcgagtcaaagataaatggacagtagtgaaggatggaaaagaacatttggaattgctgattgttgatgctaaggtatggg |
100 |
Q |
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| T |
10234724 |
gatttgtggaagctgtcagttcgagtcaaagataaatggacagtagtgaaggatggaaaagaacatttggaattgctgattgttgatgctaaggtatggg |
10234625 |
T |
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| Q |
101 |
agataacatttgaacataataccctactgctattttttggtcactcattgattttacttttgtttatgaaaacaa |
175 |
Q |
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| T |
10234624 |
agataacatttgaacataataccctactgctattttctggtcactgattggttttacttttgtttatgaaaacaa |
10234550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 10234378 - 10234316
Alignment:
| Q |
186 |
gttacttattcactttaagcttattttacaatattagggccatgatattcaactactcattcc |
248 |
Q |
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| T |
10234378 |
gttacttattcactttaagcttattttaccatattagggccatgatattcaagtactcattcc |
10234316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 28729012 - 28729082
Alignment:
| Q |
25 |
gtcaaagataaatggacagtagtgaaggatggaaaagaacatttggaattgctgattgttgatgctaaggt |
95 |
Q |
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| T |
28729012 |
gtcaaggataaatggactgttgtgaaagatggcaaggaacatttggagctggtgattgttgatgataaggt |
28729082 |
T |
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