View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21601_low_26 (Length: 250)
Name: NF21601_low_26
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_low_26 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 30933441 - 30933672
Alignment:
| Q |
16 |
atgaaggaaattttcaaacagctaattgttgttgcttttgatgtgaagattcatcttcattgaagcatacatgggtatttagtgattttcctaaacctaa |
115 |
Q |
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| T |
30933441 |
atgaaggaaattttcaaacagctaattgttgttgcttttgatgtgaagattcatcttcattgaagcatacatgggtatttagtgattttcctaaacctaa |
30933540 |
T |
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| Q |
116 |
ggaagtcgaatctgtaaaatttagaggttgtatcatcatcatttcactttgtaggtgaacacaataagcttggaaagtgtttggagttacatttaaatgg |
215 |
Q |
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| T |
30933541 |
ggaag---aatctgtaaaatttagaggttgtatcatcatcatttcactttgtaggtgaacacaataagcttggaaagtgtttggagttacatttaaatgg |
30933637 |
T |
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| Q |
216 |
aaccctaaaccaaataggaagtccaactcaagaaa |
250 |
Q |
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| T |
30933638 |
aaccctaaaccaaataggaagtccaactcaagaaa |
30933672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 1501505 - 1501287
Alignment:
| Q |
29 |
tcaaacagctaattgttgttgcttttgatgtgaagattcatcttcattgaagcatacatgggtatttagtgattttcctaaacctaaggaagtcgaatct |
128 |
Q |
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| T |
1501505 |
tcaaacagctagctgttgttgattttgatgggaagattcatcttcattcaagcataaatgagcctttagtgattttgctaaactta---gtgtagaatct |
1501409 |
T |
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| Q |
129 |
gtaaaatttagaggttgtatcatcatcatttcactttgtaggtgaacacaataagcttggaaagtgtttggagttacatttaaatggaaccctaaaccaa |
228 |
Q |
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| T |
1501408 |
tcaaaaactagaggttgcatttgtagcatttctctttggagatgaacacaataggcttgaaatgtgactggtgttacatttaaattgaaacctaaaccaa |
1501309 |
T |
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| Q |
229 |
ataggaagtccaactcaagaaa |
250 |
Q |
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| T |
1501308 |
acaagaaatccaactcaagaaa |
1501287 |
T |
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