View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21601_low_27 (Length: 242)
Name: NF21601_low_27
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 51700532 - 51700745
Alignment:
| Q |
18 |
gcattaagcctagaaaacgacaaaggttatgttaggcatatgacaacaccggaaaatctttgtcaaatcatcataacatagatcaactgatgtgatagtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51700532 |
gcattaagcctagaaaacgacaaaggttatgttaggcatatgacaacaccggaaaatctttgtcaaatcatcataacatagatcaactgatgtgatagtg |
51700631 |
T |
|
| Q |
118 |
tagaaagcataaaaccatttccatttcctaatcagaatttcattttagttctagtaatgtatagatatatgttcttatcagctcatcttaagtttgcagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51700632 |
tagaaagcataaaaccatttccatttcctaatcagaatttcattttagttctagtaatgtatagatatatattcttatcagctcatcttaagtttgcagg |
51700731 |
T |
|
| Q |
218 |
tgaaattagttctt |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
51700732 |
tgaaattagttctt |
51700745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 51700758 - 51700787
Alignment:
| Q |
166 |
ttctagtaatgtatagatatatgttcttat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51700758 |
ttctagtaatgtatagatatatgttcttat |
51700787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 1447692 - 1447561
Alignment:
| Q |
18 |
gcattaagcctagaaaacgacaaaggttatgttaggcatatgacaacaccggaaaatctttgtcaaatcatcataacatagatcaactgatgtgatagtg |
117 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||| | | |||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1447692 |
gcattaagcctagaaaatgataaaggttatgttaggcatatgacaacatcagcaaatctttttcgaatcatcataaaatagatcaactgatgtgatagtg |
1447593 |
T |
|
| Q |
118 |
tagaaagcataaaaccatttccatttcctaat |
149 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |
|
|
| T |
1447592 |
tagaaagcatgaaatcatttccatttcctaat |
1447561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 1447537 - 1447509
Alignment:
| Q |
203 |
tcttaagtttgcaggtgaaattagttctt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1447537 |
tcttaagtttgcaggtgaaattagttctt |
1447509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University