View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21601_low_6 (Length: 486)
Name: NF21601_low_6
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 486
Target Start/End: Original strand, 41979498 - 41979979
Alignment:
| Q |
7 |
gaaagaattccttcctatgattgatgaggtacataatctatctccaataaaaattgattgatannnnnnnnn--catgattgaaaaagaaattaacgacg |
104 |
Q |
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| T |
41979498 |
gaaagaattccttcctatgattgatgaggtacagaatctatctccaataaataatgattgatatttttttttttcatgattgaaaaagaaattaaccacg |
41979597 |
T |
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| Q |
105 |
ggatattttcgtgcaggtttttagaaccctcatcgatattaccaaagacatcgaaggcgcaaaagttgagaatcacaagttttgtgtttctgtacattac |
204 |
Q |
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| T |
41979598 |
ggatattttcgtgcaggtttttagaaccctcatcgatattaccaaagacatcgaaggcgcaaaagttgagaatcacaagttttgcgtttctgtacattac |
41979697 |
T |
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| Q |
205 |
cgtaatgtagaagagaatgtaaggattaattgcctacccccaaccatcgatttcttctttttaatctcatttcatgttctcacctttcttgaattgattg |
304 |
Q |
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| T |
41979698 |
cgtaatgtagaagagaatgtaaggattaattgcctacccccaaccatcgatttcttctttttaatctcatttcatgttctcacctttcttgaattgattg |
41979797 |
T |
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| Q |
305 |
cagaattggacggtgattgctcaacgtgtccatgatatcttgaaaaattaccctcgtttacgttcaactcatggaaggaaggtataatattcctatgttc |
404 |
Q |
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| T |
41979798 |
cagaattggacagtgattgctcaacgtgtccatgatattttgaaaaattaccctcgtttacgttcaactcatggaaggaaggtataatattcctatgttc |
41979897 |
T |
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| Q |
405 |
gacattattttaccaatatatattattagctttgttctttacataacttttgaacttttcattatagtcattaatttattaa |
486 |
Q |
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| T |
41979898 |
gacattattttaccaatatatattattagctttgttctttacataacttttgaactttttattatagtcattaatttattaa |
41979979 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 1566577 - 1566644
Alignment:
| Q |
148 |
aaagacatcgaaggcgcaaaagttgagaatcacaagttttgtgtttctgtacattaccgtaatgtaga |
215 |
Q |
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| T |
1566577 |
aaagacatcaaaggagcaaaaattgagaacaacaagttttgtgtgtctgtacattatcgtaatgtaga |
1566644 |
T |
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