View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21601_low_8 (Length: 402)
Name: NF21601_low_8
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 31961392 - 31961054
Alignment:
| Q |
17 |
aattgagagtaatgacacttcgatttcaccatgattttttcataacctacacaatttagattttctaannnnnnnnctttagtatttttaggataattgt |
116 |
Q |
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| T |
31961392 |
aattgtgagtaatgacacttcgatttcaccatgattttttcataacctacacaatttagattttctaattttttt-ctttagtatttttaggataattgt |
31961294 |
T |
|
| Q |
117 |
gtagacacatttggaagttagattctcgataggaaatcacaaagcatctattatttgatatgagnnnnnnnntggcaatagtaggagagaatgagagaaa |
216 |
Q |
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| T |
31961293 |
gtagacacaattggaagttagattctcgataggaaatcacaaagcatctattatttgatatgagaaaaaaa-tggcaatagtaggagagaatgagagaaa |
31961195 |
T |
|
| Q |
217 |
aacatgatttctttattttgtttagattagaagtaaaacggaaagtaaaacttgcttatggggagtcatactgtttttggaacaaatagaaccatattat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31961194 |
aacatgatttctttattttgtttagattagaagtaaaaaggaaagtaaaacttgcttatggggagtcatattgtttttggaacaaatagaaccatattat |
31961095 |
T |
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| Q |
317 |
acataagctcgaatgctcaagttaaaattgtgtagactttt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
31961094 |
acataagctcgaatgctcaagttaaaattgtgtagactttt |
31961054 |
T |
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