View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21601_low_9 (Length: 398)
Name: NF21601_low_9
Description: NF21601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21601_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 174 - 383
Target Start/End: Complemental strand, 365920 - 365711
Alignment:
| Q |
174 |
ttttcttcatgatattctcaccaagaaaatcattagtcattgtactaaaaaaggtgggttgtattatatggatgatttcaacatacgcagaaccacctat |
273 |
Q |
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| T |
365920 |
ttttcttcatgatattctcaccaaggaaatcattagtcattgtactaaaaaaggtgggttgtattatatggatgatttcaacatacgcagaaccaactat |
365821 |
T |
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| Q |
274 |
aggcaaaattctctagatataaagcataaacatattttgttgtggcatccatcatttaattgtttgaagcatttgttacctgatttattttctggattac |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
365820 |
aggcaaaattctctagatataaagcataaacatattttgttgtggcatccatcatttaattgtttgaagcatttgttacctgatttattttctggattac |
365721 |
T |
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| Q |
374 |
acgtctcata |
383 |
Q |
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|||||||||| |
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| T |
365720 |
acgtctcata |
365711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 369591 - 369435
Alignment:
| Q |
11 |
aattctacaccttcaaggagaactagtattaatttttagttacaatggtgttatatatgcagttacaaaagctgcaactgttgctctttcacattctatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
369591 |
aattctacaccttcaaggagaactagtattaatttttagttataatggtgttatatatgcagttacaaaagctgcaactgttgctctttcacattctatt |
369492 |
T |
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| Q |
111 |
tcattgtcacacttgacttgttccatctttgtcaaacaaattagcgcctattggcca |
167 |
Q |
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| T |
369491 |
tcattgtcacacttgacttgttccatctttgtcaaacaaattagcgcctattggcca |
369435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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