View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21602_low_2 (Length: 434)
Name: NF21602_low_2
Description: NF21602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21602_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 38260805 - 38261227
Alignment:
| Q |
1 |
gttgctgcttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgttgggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260805 |
gttgctgcttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggg- |
38260903 |
T |
|
| Q |
101 |
atgttaacaagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaagaatccacagcctaccacacaagaaatatggaccataccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38260904 |
atgttaacaagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaagaatccacagcctaccacacaagaaatatggaccataccc |
38261003 |
T |
|
| Q |
201 |
atgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
38261004 |
atgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactgcaagttcgaaagtgaagaagacagaaaaaag |
38261103 |
T |
|
| Q |
301 |
agatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtgataagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38261104 |
agatacatttctaggattcgaaagaggccgcgtcttcagattcaaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtgataagt |
38261203 |
T |
|
| Q |
401 |
caaatgcttctgtcaatgatgatg |
424 |
Q |
| |
|
|| |||||| |||||||||||||| |
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|
| T |
38261204 |
cacatgcttatgtcaatgatgatg |
38261227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 38244511 - 38244927
Alignment:
| Q |
8 |
cttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggggatgttaa |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||| | | ||| |||||||| ||||| |||| |
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|
| T |
38244511 |
cttcttctcatcttgatcttcatgtaggcttatcatcacaactacaagaactgccttctcaaactatcaatttatttgttactgatgttagggatattaa |
38244610 |
T |
|
| Q |
108 |
caagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttca |
207 |
Q |
| |
|
|||||| |||| || |||||||||||||| ||||||||||| ||||||| | ||| ||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
38244611 |
caagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggtaaaattcacagcctaccacacgagaaacatggaccatacccatgttcc |
38244710 |
T |
|
| Q |
208 |
aaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagataca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38244711 |
caatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagataca |
38244810 |
T |
|
| Q |
308 |
tttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtgataagtcaaatgc |
407 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |||| |
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|
| T |
38244811 |
attctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgatggaagaactacttttgttcctgttgttgcttgtgctgataagtcacatgc |
38244910 |
T |
|
| Q |
408 |
ttctgtcaatgatgatg |
424 |
Q |
| |
|
||| ||||| |||||| |
|
|
| T |
38244911 |
ttcaatcaataatgatg |
38244927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 147 - 388
Target Start/End: Complemental strand, 47285737 - 47285499
Alignment:
| Q |
147 |
tattaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgct |
246 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| ||||| ||| ||||||| ||| | |||||| | ||||||||| || | | ||||||||| ||||| ||| |
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|
| T |
47285737 |
tattgatgatggtagaatccacagtctacctcacaataaacatggaccgtacacgtgttcagagtgcaacaaagtaatagcaacatcacagaaattcgct |
47285638 |
T |
|
| Q |
247 |
aatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaa |
346 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||| || ||||||| |
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|
| T |
47285637 |
gctcatgt---atcaagtcactacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaa |
47285541 |
T |
|
| Q |
347 |
agctcaatgatggaacaactacttttgttcctgttattgctt |
388 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||| ||||||| |
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|
| T |
47285540 |
agctcgatgatggaacaactactcttgtttctgtcattgctt |
47285499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 152 - 377
Target Start/End: Complemental strand, 47307289 - 47307067
Alignment:
| Q |
152 |
atgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatca |
251 |
Q |
| |
|
||||||| |||| |||||| ||| ||||||| ||| |||||||||| | ||| |||| || |||||| || | | |||||||||||||||||||| ||| |
|
|
| T |
47307289 |
atgatggtagaacccacagtctatcacacaataaaaatggaccatatacgtgtccaaagtgtaacaaagtactagcaacatcacaaaaatttgctagtca |
47307190 |
T |
|
| Q |
252 |
tgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctc |
351 |
Q |
| |
|
|| |||||| |||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||| || ||| | | ||||||||| |
|
|
| T |
47307189 |
tg---catcaatacactacaagtcagaaagtgaagaagagaaaaaaaagagatacatgtctaggatccgaaagagaccagatctccgattccaaaagctc |
47307093 |
T |
|
| Q |
352 |
aatgatggaacaactacttttgttcc |
377 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
47307092 |
aatgatggaacaactacttttgttcc |
47307067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 388
Target Start/End: Complemental strand, 2589674 - 2589546
Alignment:
| Q |
260 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatgg |
359 |
Q |
| |
|
||||||||||||||| |||| | |||||| ||||||||||||||||| |||| ||| |||||||| || ||| | |||||||||||||||||||| |
|
|
| T |
2589674 |
caagtcactacaagtctgaaactctagaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatgg |
2589575 |
T |
|
| Q |
360 |
aacaactacttttgttcctgttattgctt |
388 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |
|
|
| T |
2589574 |
aacaactacttttgttccagttgttgctt |
2589546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 2589833 - 2589914
Alignment:
| Q |
295 |
aaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttc |
376 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| || ||||||||||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttc |
2589914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 377
Target Start/End: Complemental strand, 10299735 - 10299617
Alignment:
| Q |
260 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaa-gagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatg |
358 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||| ||||||||| |||| ||| |||||| || ||| || |||||||||||||||||| |
|
|
| T |
10299735 |
caagtcactacaagtctgaaactctagaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgata |
10299636 |
T |
|
| Q |
359 |
gaacaactacttttgttcc |
377 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10299635 |
gaacaactacttttgttcc |
10299617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 375
Target Start/End: Original strand, 22222449 - 22222647
Alignment:
| Q |
175 |
ccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaa-tatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaag |
273 |
Q |
| |
|
|||||||| ||| ||||| ||||| | ||| |||| |||||||||| || || |||||| ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
22222449 |
ccacacaataaacatggatcatacacgtgtgcaaagtgcaacaaaagtaatttcaacatcccaaaaatttgctagtcatgt---ggcaagtcactacaat |
22222545 |
T |
|
| Q |
274 |
ttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttg |
373 |
Q |
| |
|
|| |||| | ||||||| ||||||||||||||||| |||||||| | |||||| | ||| || |||||||| ||||||| ||||||||| || |||| |
|
|
| T |
22222546 |
tttgaaactcaagaagaaagaaaaaagagatacatgtctaggatcccaaagagaacaaatctgcagattcaaaaactcaatgttggaacaacaacatttg |
22222645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 22222382 - 22222289
Alignment:
| Q |
285 |
agaagacagaaaaaagagatacatttctaggattcgaaagagg--ccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttc |
376 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||| |||||||| || ||| | ||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
22222382 |
agaagagaaaaaaaagagatacatgtctaggatccgaaagagtgaccaaatctccggattcataagatcaatgatggaacaactacttttgttc |
22222289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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