View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21603_high_12 (Length: 363)
Name: NF21603_high_12
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21603_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 49450732 - 49451078
Alignment:
| Q |
8 |
tctatgtcaagaataatgctagcaacacattatctaacacgtttttctcaacacactctaatcggttgaaatttaaacaagtctcgctaaatttatgtgg |
107 |
Q |
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| T |
49450732 |
tctatgtcaagaataatgctagcaacacattatctaacacgtttttctcaacacactataattggttgaaatttaaacaagtctcgctaaatttatgtgg |
49450831 |
T |
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| Q |
108 |
tgtctaaataatttcgtgggatccatttgaatttgaacaaagtagagagatagtgtattattagcacatggaagtggttcatagatcaccatacatatgc |
207 |
Q |
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| T |
49450832 |
tgtctaaataatttcgtgggatccatttgaattttaacaaagtagagagatagtgtattattagcacatggaagtggttcatagatcaccatacatatgc |
49450931 |
T |
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| Q |
208 |
ccagatttgaaaatctacatcagtgggaatttaggagtaggcgacgactctcaactcccacaat-nnnnnnnnnnnnntagtaactagaaagcagtgcat |
306 |
Q |
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| T |
49450932 |
ccagatttgaaaatctacatcagtgggaatttaggagtaggcgacgactctcaactcccacaataaaaaatttaaaaatagtaactagaaagcagtgcat |
49451031 |
T |
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| Q |
307 |
gcaacaattaacatgaaataaattgtgaattaagagacgtacctatg |
353 |
Q |
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| T |
49451032 |
gcaataattaacatgaaataaattgtgaattaagaaacgtacctatg |
49451078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 47949055 - 47949117
Alignment:
| Q |
94 |
ctaaatttatgtggtgtctaaataatttcgtgggatccatttgaatttgaacaaagtagagag |
156 |
Q |
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| T |
47949055 |
ctaaatttatgtggggcctacatgatttcgtgggatccaattgaatttcaaccaattagagag |
47949117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 9705350 - 9705304
Alignment:
| Q |
95 |
taaatttatgtggtgtctaaataatttcgtgggatccatttgaattt |
141 |
Q |
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| T |
9705350 |
taaattcatgtggggtctacataattttgtgggatccatttgaattt |
9705304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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