View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21603_high_13 (Length: 337)
Name: NF21603_high_13
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21603_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 34344850 - 34345169
Alignment:
| Q |
1 |
gtgcaacaaggcctaattgtgctcgaatcatctccacagcatcctctcctttcttcttgtctctagcagttaacactacactcagtcccaactcagcaaa |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34344850 |
gtgcaacaaggcctaattgtgctcgaattctctccacagcatcctctcctttcttcttgtctctagcagttaacactacactcagtcccaactcagcaaa |
34344949 |
T |
|
| Q |
101 |
acgtttcacaagagcaaacccaatgcccttgtttcctcctgtcaccaccgccaccgtctccttcgaccaccaccttcattcattcgttacatatatataa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34344950 |
acgtttcacaagagcaaacccaatgcccttgtttcctcctgtcaccaccgccaccgtctccttcgaccaccaccttcattcattcgttacatatatataa |
34345049 |
T |
|
| Q |
201 |
aagcaaattaattaaacaaatgtatgacaataaatgtgtagtagtacagtggtattgaaaaaattaggtacctggttgagcagagtgcaggtgaaggaaa |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34345050 |
aagcaaattaattaaacacatgtatgacaataaatttgtagtagtacagtggtattgaaaaaattaggtacctggttgagcagagtgcaggtgaaggaaa |
34345149 |
T |
|
| Q |
301 |
ataaggttctggctccatat |
320 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
34345150 |
ataaggttctggctccatat |
34345169 |
T |
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