View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21603_high_17 (Length: 274)

Name: NF21603_high_17
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21603_high_17
NF21603_high_17
[»] chr8 (1 HSPs)
chr8 (19-263)||(31834525-31834769)
[»] chr3 (2 HSPs)
chr3 (110-170)||(45924679-45924739)
chr3 (75-164)||(31841993-31842083)
[»] chr2 (3 HSPs)
chr2 (129-171)||(45642009-45642051)
chr2 (129-171)||(4322597-4322639)
chr2 (79-163)||(32429724-32429808)
[»] chr7 (1 HSPs)
chr7 (128-170)||(26870051-26870093)
[»] chr5 (1 HSPs)
chr5 (79-171)||(32343730-32343822)
[»] chr1 (1 HSPs)
chr1 (127-171)||(43009284-43009328)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 31834525 - 31834769
Alignment:
Q  19 taagggcaagtatagttgcaaaatcgtaagatcttaggatataaattaggagttctcccaattccacaaaaatgggattatatgcgtagtcttaatcgtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31834525 taagggcaagtatagttgcaaaatcgtaagatcttaggatataaattaggagttctcccaattccacaaaaatgggattatatgcgtagtcttaatcgtt 31834624  T
Q  119 gagggcaggcataatcgcaaaatcgtaagactttacgattcaaatcgagatttcaagaccgtaatctcataaattaatctgaagcggatttgaagaatca 218  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31834625 gagggcaagcataatcgcataatcgtaagactttacgattcaaatcgagatttcaagaccgtaatctaataaattaatctgaagcggatttgaagaatca 31834724  T
Q  219 gaaatgtaatgaaagaaaagaaaaaacctcttgttcatccttcat 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31834725 gaaatgtaatgaaagaaaagaaaaaacctcttgttcatccttcat 31834769  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 45924679 - 45924739
Alignment:
Q  110 ttaatcgttgagggcaggcataatcgcaaaatcgtaagactttacgattcaaatcgagatt 170  Q
    ||||||| | ||||||  ||||||||||||||| ||||| |||||||||||||||||||||    
T  45924679 ttaatcgctaagggcaatcataatcgcaaaatcataagattttacgattcaaatcgagatt 45924739  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 31842083 - 31841993
Alignment:
Q  75 cccaattccacaaaaa-tgggattatatgcgtagtcttaatcgttgagggcaggcataatcgcaaaatcgtaagactttacgattcaaatc 164  Q
    |||||||||||||||| | |||||||||| | | || ||||| || |||| |  ||| ||||||||||||||||| |||| ||||||||||    
T  31842083 cccaattccacaaaaaataggattatatgtgaactcctaatctttaagggaaaacatgatcgcaaaatcgtaagattttatgattcaaatc 31841993  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 45642009 - 45642051
Alignment:
Q  129 ataatcgcaaaatcgtaagactttacgattcaaatcgagattt 171  Q
    |||||||||||||| ||||| ||||||||||||||||||||||    
T  45642009 ataatcgcaaaatcataagattttacgattcaaatcgagattt 45642051  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 4322639 - 4322597
Alignment:
Q  129 ataatcgcaaaatcgtaagactttacgattcaaatcgagattt 171  Q
    |||||||||||||||||||| |||| |||| ||||||||||||    
T  4322639 ataatcgcaaaatcgtaagattttaagattaaaatcgagattt 4322597  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 32429808 - 32429724
Alignment:
Q  79 attccacaaaaatgggattatatgcgtagtcttaatcgttgagggcaggcataatcgcaaaatcgtaagactttacgattcaaat 163  Q
    ||||||| ||||| ||||||| ||  || ||||||| ||||| |||| |||||||||||||||| |  || ||||| ||||||||    
T  32429808 attccaccaaaataggattatgtgtatactcttaatggttgatggcaagcataatcgcaaaatcatgggattttacaattcaaat 32429724  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 26870051 - 26870093
Alignment:
Q  128 cataatcgcaaaatcgtaagactttacgattcaaatcgagatt 170  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||    
T  26870051 cataatcgcaaaatcataagattttacgattcaaatcgggatt 26870093  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 32343730 - 32343822
Alignment:
Q  79 attccacaaaaatgggattatatgcgtagtcttaatcgttgagggcaggcataatcgcaaaatcgtaagactttacgattcaaatcgagattt 171  Q
    ||||||| ||| | ||||||| ||  || ||||||| | |||||||| |||||||| |||||||||  || ||||||||||||| || |||||    
T  32343730 attccaccaaactaggattatgtgtatactcttaattgctgagggcaagcataatcacaaaatcgtgggattttacgattcaaaacgggattt 32343822  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 43009284 - 43009328
Alignment:
Q  127 gcataatcgcaaaatcgtaagactttacgattcaaatcgagattt 171  Q
    |||||| ||||||||| ||||| |||||||||||||||| |||||    
T  43009284 gcataaacgcaaaatcataagattttacgattcaaatcgggattt 43009328  T

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