View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21603_high_2 (Length: 512)
Name: NF21603_high_2
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21603_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 37319551 - 37319845
Alignment:
| Q |
17 |
aacctgtgtgcaattatttcattatttgacaaaataagagacaaatgatagatttgttgtagaaaattaaaatatattacttcattacagaaatctatga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37319551 |
aacctgtgtgcaattatttcattatttgacaaaataagagacaaatgatagatttgttgtagaaaattaaaatatattacttcattacagaaatctatga |
37319650 |
T |
|
| Q |
117 |
aattctaaaaatagctatcctgattgatcaataatatgaatacagttacaagtaaaatttgttatggacatatttaaataggatattgaaatcttagaaa |
216 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37319651 |
aattctaaaaatagcaatgctgattgatcaataatatgaatacggttacaagtaaaatttgttatggacatatttaaataggatattgaaatcttagaaa |
37319750 |
T |
|
| Q |
217 |
agaaataaagtaaaagaaatcctgaagtaaaactcagaataatttttctaaaacacaccttgttgctcacttggactagtgtgttctagacagtg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37319751 |
agaaataaagtaaaagaaatcctgaagtaaaactcagaataaattttctaaaacaaacctagttgctcacttggactagtgtgttctagacagtg |
37319845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 311 - 438
Target Start/End: Original strand, 37319983 - 37320110
Alignment:
| Q |
311 |
gaaacaaaaaatgattccctttcttttttgtttaatgctatccacacatattacctttatcaagtcagtgtctcctttccctttcctttaccaaccacaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37319983 |
gaaacaaaaaatgattccctttcttttttgtttaatgctatccacacatattacctttatcaagtcagtgtctcctttccctttcctttaccaaccacaa |
37320082 |
T |
|
| Q |
411 |
agtctatgacattaacaaacaaaaacat |
438 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
37320083 |
agtctatgacattaacaaacaaaaacat |
37320110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 431 - 484
Target Start/End: Original strand, 37320171 - 37320224
Alignment:
| Q |
431 |
aaaaacatgacaagtacagactagtaaatcataacaacacaacaatcttaatta |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37320171 |
aaaaacatgacaagtacagactagtaaatcataacaacacaacaatcttaatta |
37320224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University