View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21603_high_20 (Length: 262)
Name: NF21603_high_20
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21603_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 5520083 - 5520312
Alignment:
| Q |
17 |
ataatacttcatcagtttcttatataatacaagtcattttagtaaataatacacaaattaatagagatttcaatatgaacaaattttgcagggactaaaa |
116 |
Q |
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| T |
5520083 |
ataatacttcatcagtttcttatataatacaagtcattttagtaaataatacacaaattaatagagatttcaatatgaacaaattttgcagggactaaaa |
5520182 |
T |
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| Q |
117 |
taaaatacagaagatcaaaagtaaaaagttgtagactcgtataagaacgcaaaaccagaaaattatatatttgcagaaactaaatgcatatttaaaccta |
216 |
Q |
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| T |
5520183 |
taaaatacagaagatcaaaagtaaaaagttgtagactcgtataagaacgcaaaaccagaaaattatatatttgcagagactaaatgcatatttaaaccta |
5520282 |
T |
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| Q |
217 |
tgataaattacctgcacatcgttcgttttt |
246 |
Q |
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| T |
5520283 |
tgataaattacctgcgcatcgttcattttt |
5520312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 32311804 - 32311863
Alignment:
| Q |
83 |
atttcaatatgaacaaattttgcagggactaaaataaaatacagaagatcaaaagtaaaaa |
143 |
Q |
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| T |
32311804 |
attttaatatgaataaattttgcaaagactaaaataaattaca-aggatcaaaagtaaaaa |
32311863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 10140842 - 10140886
Alignment:
| Q |
79 |
agagatttcaatatgaacaaattttgcagggactaaaataaaata |
123 |
Q |
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| T |
10140842 |
agagacttcaatatgaacatattttgtaggaactaaaataaaata |
10140886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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