View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21603_high_21 (Length: 260)
Name: NF21603_high_21
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21603_high_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 52183426 - 52183184
Alignment:
| Q |
18 |
gttacctgcaactccgctggacaatgacttttcaaatctgcaacacaacctgcatactgacaatcacctgttcctctggttgcttgtatccctatcccga |
117 |
Q |
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| T |
52183426 |
gttacctgcaactccgctggacaatgactgttcaaatccgcaacacaacctgcatactgacaatcacctgttcctctggttgcttgtatccctatcccga |
52183327 |
T |
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| Q |
118 |
cattgtaaccatccaccaaactaacgtcatagaagtctttatctccactcacgcttccgatcgtaaattccgccaacgtcactggaggagcacctccacc |
217 |
Q |
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| T |
52183326 |
cattgtaaccatccaccaaactaacgtcatagaagtctttatctccactcacgcttccgatcgtaaattccgccaacgtcactggaggagcacctccacc |
52183227 |
T |
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| Q |
218 |
attgcatttcaatcctccagtgcagtctccggtgatgcaattc |
260 |
Q |
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| T |
52183226 |
attgcatttcaatcctccggtgcagtctccggtgatgcaattc |
52183184 |
T |
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