View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21603_high_25 (Length: 217)
Name: NF21603_high_25
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21603_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 43009047 - 43009251
Alignment:
| Q |
1 |
attgatcctgaacatgcttcctaaggggaaagttccttcatctggaccaagcaaagggaccaacaacctcaacaactagctacaattgatgaata--ctt |
98 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43009047 |
attgatcctgaacatgctccctaaggggaaagttccttcatctggaccaagcaaagggaccaacaacctcaacaactagctacaattgatgaatatactt |
43009146 |
T |
|
| Q |
99 |
atacaattatagacatgatacattacattcgtcaagcaactcaatcattgctctctcgttgcttatgtcactcaattattttgttttttaattttctatc |
198 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43009147 |
atacaattatagacaagatacattacattcgtcaagcaactcaatcattgctctctcgttgcttatgtcactcaatttttttgttttttaattttctatc |
43009246 |
T |
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| Q |
199 |
ttctt |
203 |
Q |
| |
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||||| |
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| T |
43009247 |
ttctt |
43009251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 43015304 - 43015382
Alignment:
| Q |
1 |
attgatcctgaacatgcttcctaaggggaaagttccttcatctggaccaagcaaagggaccaacaacctcaacaactag |
79 |
Q |
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||||||| | |||||||||||||||||| ||||||| |||| ||||||| ||| ||| |||||| ||||||| |||| |
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| T |
43015304 |
attgatcttcaacatgcttcctaaggggggagttcctccatcaggaccaactaaaaggatcaacaatctcaacagctag |
43015382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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