View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21603_high_29 (Length: 204)

Name: NF21603_high_29
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21603_high_29
NF21603_high_29
[»] scaffold0011 (2 HSPs)
scaffold0011 (105-184)||(135437-135516)
scaffold0011 (16-79)||(135553-135616)
[»] chr2 (1 HSPs)
chr2 (16-184)||(25808782-25808952)
[»] chr7 (1 HSPs)
chr7 (18-184)||(23068465-23068633)
[»] chr6 (1 HSPs)
chr6 (106-163)||(26909386-26909444)


Alignment Details
Target: scaffold0011 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 135516 - 135437
Alignment:
Q  105 caaaaaccccctttttgttaggagtataggatagcgttcagcacaaagtgctaacaatactatccacctatgttagcact 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  135516 caaaaaccccctttttgttaggagtataggatagcgttcagcacaaagtgctaacaatactatccacctatgttagcact 135437  T

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Target: scaffold0011; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 135616 - 135553
Alignment:
Q  16 agatgaaggtcgtgtgtgaaagaagagagggaattggaaatctcttcagcgccaattgctaaaa 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  135616 agatgaaggtcgtgtgtgaaagaagagagggaattggaaatctgttcagcgccaattgctaaaa 135553  T

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Target: chr2 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 25808952 - 25808782
Alignment:
Q  16 agatgaaggtcgtgtgtgaaagaagagagggaattggaaatctcttcagcgccaattgctaaaa-ttaatgcnnnnnnnnnnnnnnnnnn-caaaaaccc 113  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||| |                   |||||||||    
T  25808952 agatgaaggtcgtgtgtgaaagaagagagggaattgaaaatctgttcaacgccaattgctaaaagttaatccgcttttttttttaatttttcaaaaaccc 25808853  T
Q  114 cctttttgttaggagtataggatagcgttcagcacaaagtgctaacaatactatccacctatgttagcact 184  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25808852 ccgttttgttaggagtataggatagcgttcagcacaaagtgctaacaatactatccacctatattagcact 25808782  T

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Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 23068465 - 23068633
Alignment:
Q  18 atgaaggtcgtgtgtgaaagaagagagggaattggaaatctcttcagcgccaattgctaaaattaat--gcnnnnnnnnnnnnnnnnnncaaaaaccccc 115  Q
    ||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||  ||                  |||||| || |    
T  23068465 atgaaggtcgtgtgtgaaagaagagagggaattggaaatttgttgagcgccaattgctaaaattaatccgctttgtttttttaatttttcaaaaatcctc 23068564  T
Q  116 tttttgttaggagtataggatagcgttcagcacaaagtgctaacaatactatccacctatgttagcact 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  23068565 tttttgttaggagtataggatagcgttcagcacaaagtgctaacaatactatacacatatgttagcact 23068633  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 26909386 - 26909444
Alignment:
Q  106 aaaaaccccctttttgttaggagtataggatagcgttca--gcacaaagtgctaacaata 163  Q
    |||||| ||||||||||||||| |||| |||||||||||   ||||||||||||||||||    
T  26909386 aaaaacaccctttttgttagga-tataagatagcgttcaacacacaaagtgctaacaata 26909444  T

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