View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21603_high_5 (Length: 455)

Name: NF21603_high_5
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21603_high_5
NF21603_high_5
[»] chr6 (18 HSPs)
chr6 (12-264)||(1300502-1300755)
chr6 (280-441)||(1300887-1301046)
chr6 (186-261)||(13583777-13583851)
chr6 (185-263)||(4097622-4097700)
chr6 (168-251)||(2893670-2893752)
chr6 (167-263)||(2892713-2892808)
chr6 (224-263)||(3023607-3023646)
chr6 (167-254)||(16738115-16738201)
chr6 (205-263)||(1395712-1395770)
chr6 (223-263)||(32926739-32926779)
chr6 (188-247)||(5585428-5585486)
chr6 (172-263)||(33235995-33236085)
chr6 (205-263)||(1390396-1390453)
chr6 (185-263)||(31849167-31849244)
chr6 (166-263)||(30850022-30850118)
chr6 (185-242)||(33041527-33041583)
chr6 (187-263)||(12811091-12811165)
chr6 (227-263)||(32922443-32922479)
[»] chr7 (22 HSPs)
chr7 (141-264)||(40196641-40196763)
chr7 (143-263)||(34235117-34235243)
chr7 (131-263)||(17852873-17853005)
chr7 (155-263)||(24970275-24970383)
chr7 (185-263)||(33655218-33655295)
chr7 (167-263)||(41497067-41497162)
chr7 (141-263)||(37417743-37417865)
chr7 (167-263)||(39855975-39856070)
chr7 (141-239)||(13771080-13771188)
chr7 (185-263)||(41008239-41008315)
chr7 (201-263)||(25887265-25887326)
chr7 (201-255)||(34228436-34228489)
chr7 (223-263)||(18063671-18063711)
chr7 (167-263)||(43230275-43230370)
chr7 (213-263)||(1051608-1051658)
chr7 (225-263)||(18127352-18127390)
chr7 (223-261)||(20393695-20393733)
chr7 (213-263)||(22163219-22163269)
chr7 (213-263)||(22221927-22221977)
chr7 (167-263)||(31571578-31571675)
chr7 (168-253)||(47390895-47390979)
chr7 (223-263)||(7791813-7791853)
[»] chr8 (24 HSPs)
chr8 (141-263)||(42650446-42650573)
chr8 (145-263)||(37032396-37032513)
chr8 (167-263)||(7503064-7503159)
chr8 (134-263)||(36308847-36308977)
chr8 (185-263)||(37923188-37923265)
chr8 (167-263)||(11575516-11575611)
chr8 (141-254)||(16652960-16653074)
chr8 (168-263)||(7979180-7979274)
chr8 (167-253)||(31543192-31543277)
chr8 (166-263)||(31738461-31738557)
chr8 (169-253)||(3726975-3727058)
chr8 (157-263)||(11785554-11785660)
chr8 (185-263)||(28083799-28083876)
chr8 (185-263)||(41103616-41103693)
chr8 (185-253)||(2248509-2248576)
chr8 (135-263)||(33922521-33922654)
chr8 (225-263)||(4874452-4874490)
chr8 (201-263)||(6315135-6315196)
chr8 (225-263)||(30581920-30581958)
chr8 (185-251)||(30664418-30664483)
chr8 (226-263)||(24243157-24243194)
chr8 (185-254)||(40990303-40990371)
chr8 (167-263)||(9718589-9718684)
chr8 (226-254)||(16838159-16838187)
[»] chr3 (20 HSPs)
chr3 (141-250)||(651742-651852)
chr3 (143-263)||(52185029-52185150)
chr3 (141-254)||(37102267-37102381)
chr3 (146-251)||(46556160-46556265)
chr3 (173-263)||(41110431-41110520)
chr3 (185-260)||(46204943-46205017)
chr3 (185-254)||(14898033-14898101)
chr3 (141-263)||(2387870-2387992)
chr3 (185-263)||(18654710-18654787)
chr3 (201-263)||(21773855-21773916)
chr3 (185-251)||(25655094-25655159)
chr3 (185-263)||(24560274-24560351)
chr3 (185-263)||(27542041-27542118)
chr3 (213-263)||(36569013-36569063)
chr3 (173-263)||(41040060-41040149)
chr3 (185-263)||(52473972-52474049)
chr3 (202-263)||(16275815-16275875)
chr3 (185-253)||(10748417-10748484)
chr3 (167-251)||(28582631-28582714)
chr3 (223-263)||(48683706-48683746)
[»] chr1 (16 HSPs)
chr1 (173-263)||(40095043-40095133)
chr1 (141-254)||(8529811-8529924)
chr1 (167-263)||(51597707-51597802)
chr1 (167-261)||(2859044-2859137)
chr1 (167-261)||(42230578-42230670)
chr1 (167-263)||(32951428-32951523)
chr1 (167-263)||(35349572-35349667)
chr1 (136-253)||(26940963-26941080)
chr1 (201-263)||(49946698-49946759)
chr1 (139-263)||(44211015-44211139)
chr1 (151-263)||(50744391-50744503)
chr1 (167-263)||(41498443-41498538)
chr1 (187-254)||(30010391-30010457)
chr1 (203-263)||(42742420-42742478)
chr1 (226-258)||(46218105-46218137)
chr1 (223-263)||(49065549-49065589)
[»] chr5 (25 HSPs)
chr5 (141-254)||(9856892-9857005)
chr5 (185-263)||(28279586-28279664)
chr5 (185-263)||(4373676-4373753)
chr5 (201-263)||(16938552-16938613)
chr5 (136-196)||(39965992-39966053)
chr5 (185-261)||(7544193-7544268)
chr5 (185-263)||(14681526-14681603)
chr5 (185-254)||(9798731-9798799)
chr5 (167-252)||(26414932-26415016)
chr5 (167-263)||(13634750-13634845)
chr5 (223-263)||(14684592-14684632)
chr5 (185-251)||(10476084-10476150)
chr5 (185-256)||(22022907-22022977)
chr5 (172-263)||(37551452-37551541)
chr5 (172-263)||(37654282-37654371)
chr5 (201-263)||(2550462-2550523)
chr5 (223-261)||(27110122-27110160)
chr5 (169-263)||(37606936-37607028)
chr5 (185-255)||(39966070-39966139)
chr5 (185-263)||(40815354-40815430)
chr5 (185-233)||(43433-43481)
chr5 (203-263)||(10072757-10072816)
chr5 (201-261)||(11756950-11757009)
chr5 (185-261)||(16501902-16501978)
chr5 (226-254)||(20146985-20147013)
[»] chr2 (27 HSPs)
chr2 (185-263)||(37740001-37740079)
chr2 (166-263)||(36347651-36347747)
chr2 (167-263)||(8426981-8427076)
chr2 (184-263)||(36566961-36567039)
chr2 (198-263)||(32503229-32503293)
chr2 (142-263)||(12541773-12541900)
chr2 (223-263)||(18811422-18811462)
chr2 (171-263)||(28262553-28262644)
chr2 (167-263)||(39821708-39821803)
chr2 (142-250)||(19566944-19567057)
chr2 (141-251)||(23748107-23748217)
chr2 (185-260)||(40022427-40022501)
chr2 (226-261)||(42537859-42537894)
chr2 (185-263)||(15224804-15224881)
chr2 (201-263)||(16565850-16565911)
chr2 (201-254)||(12751887-12751940)
chr2 (167-263)||(2241449-2241544)
chr2 (166-254)||(39354293-39354380)
chr2 (140-254)||(7681259-7681373)
chr2 (204-263)||(31795879-31795937)
chr2 (223-262)||(41778867-41778906)
chr2 (213-263)||(6721732-6721782)
chr2 (214-263)||(17379897-17379946)
chr2 (174-263)||(39732839-39732926)
chr2 (223-263)||(887010-887050)
chr2 (223-259)||(20545803-20545839)
chr2 (223-263)||(31061453-31061493)
[»] chr4 (19 HSPs)
chr4 (185-263)||(35248743-35248820)
chr4 (185-263)||(27735802-27735879)
chr4 (169-263)||(17938217-17938311)
chr4 (185-263)||(26166994-26167071)
chr4 (189-263)||(36151637-36151710)
chr4 (185-263)||(37711200-37711277)
chr4 (185-254)||(6891417-6891485)
chr4 (167-263)||(31348431-31348526)
chr4 (168-254)||(47433827-47433913)
chr4 (185-263)||(5730940-5731017)
chr4 (185-263)||(54320491-54320568)
chr4 (167-263)||(46007811-46007906)
chr4 (141-195)||(34110981-34111036)
chr4 (166-263)||(2247913-2248007)
chr4 (225-263)||(41227576-41227614)
chr4 (185-263)||(45741947-45742024)
chr4 (210-263)||(47846165-47846218)
chr4 (167-263)||(54935107-54935203)
chr4 (223-263)||(45132611-45132651)
[»] scaffold0262 (1 HSPs)
scaffold0262 (134-263)||(16406-16535)
[»] scaffold0294 (1 HSPs)
scaffold0294 (185-263)||(15320-15397)
[»] scaffold0096 (1 HSPs)
scaffold0096 (167-254)||(6623-6709)
[»] scaffold0012 (1 HSPs)
scaffold0012 (131-217)||(184603-184690)
[»] scaffold0171 (1 HSPs)
scaffold0171 (169-247)||(15991-16068)
[»] scaffold0067 (1 HSPs)
scaffold0067 (167-263)||(39297-39395)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 1300502 - 1300755
Alignment:
Q  12 atgaatcatggaatgtgctatacattgtacgaaaattagggcataaaactcacaaaagaaatgattttgttttctctcttgatttatgtgtgttgagtat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  1300502 atgaatcatggaatgtgctatacattgtacgaaaattagggcataaaactcacaaaagaaatgataatgttttctctcttgatttatgtgtgttgagtat 1300601  T
Q  112 gttcaataaacaatgttggaaactcttaaggtgtgtttagattgagggtttagga-gggagagtttactttatgtttttaaattatagattatataacat 210  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||  |||||||||||||    
T  1300602 gttcaataaacaatgttggaaactcttagggtgtgtttggattgagggtttaggaggggagggtttactttatgtttttaaattacggattatataacat 1300701  T
Q  211 gttttttccaagataaattaagtgtgattgaaatattatatgattatttatcag 264  Q
     |||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  1300702 atttttttcaagataaattaagtgtgattgaagtattatatgattgtttatcag 1300755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 280 - 441
Target Start/End: Original strand, 1300887 - 1301046
Alignment:
Q  280 cactctcaaaactagatatttttcctaacataatttcttggaagctggcaaaaagaaggagaaagttactgagagag--cccacattcatgagtaattaa 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||    |||    
T  1300887 cactctcaaaactagatatttttcctaacataatttcttggaagctggcaaaaagaaggagaaagttactgagagagaacccacatttatgag----taa 1300982  T
Q  378 agacttccatttcgtgaagtctagattgcaaaccacttgatagaaaaaagaggtttatctttga 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1300983 agacttccatttcgtgaagtctagattgcaaaccacttgatagaaaaaagaggtttatctttga 1301046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 13583777 - 13583851
Alignment:
Q  186 ttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttat 261  Q
    |||||||||| |||||||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||||    
T  13583777 ttttaaattacagattatataacatgttttt-ctaaaataaattaagtgtgattgaaatattatatgatcatttat 13583851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 4097700 - 4097622
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  ||  ||||||||| |||||||||| |||||||||||||||||||| |||||||||||  |||||||    
T  4097700 tttttaaattacggacaatataacattttttttccaaaataaattaagtgtgattgaagtattatatgatcgtttatca 4097622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 2893670 - 2893752
Alignment:
Q  168 ggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatat 251  Q
    ||||||||||||||  ||||||||| || ||| ||||||||||| |||||| || |||||||||||||||||||  ||||||||    
T  2893670 ggagagtttacttttcgtttttaaactacagactatataacatg-tttttctaaaataaattaagtgtgattgatgtattatat 2893752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 2892808 - 2892713
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||| ||||||||   |||||||| ||  || ||||||||| |||||| | || ||||||| ||||||||||||||||||||||||| |||||||    
T  2892808 gggagaatttacttttcttttttaaactacggactatataacacgttttt-ctaaaataaatttagtgtgattgaaatattatatgattgtttatca 2892713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 3023607 - 3023646
Alignment:
Q  224 taaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  3023607 taaattaagtgtgaatgaaatattatatgattatttatca 3023646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 254
Target Start/End: Complemental strand, 16738201 - 16738115
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgat 254  Q
    |||||||||||||||   ||||||||||| ||||||||||| ||| |||||| || ||||| ||||||| ||| || |||||||||||    
T  16738201 gggagagtttacttttcttttttaaattacagattatataaaatg-tttttctaaaataaagtaagtgttatttaagtattatatgat 16738115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 1395712 - 1395770
Alignment:
Q  205 taacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||  || ||||||||||||||||||||||| || ||||| ||||||||    
T  1395712 taacatgttttttataaaataaattaagtgtgattgaaataatacatgatcatttatca 1395770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 32926739 - 32926779
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  32926739 ataaattaagtgtgattgaagtattatatgatcatttatca 32926779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 5585486 - 5585428
Alignment:
Q  188 ttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatatt 247  Q
    ||||||||  || |||||||||||||||| | || |||||||||||||||||||||||||    
T  5585486 ttaaattacggactatataacatgttttt-ctaaaataaattaagtgtgattgaaatatt 5585428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 33235995 - 33236085
Alignment:
Q  172 agtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||   |||||||||||  || |||||||||||||||| | || ||||||||||  ||||||||  ||||||||||| |||||||    
T  33235995 agtttacttttcttttttaaattacggactatataacatgttttt-ctaaaataaattaagactgattgaagaattatatgattgtttatca 33236085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 1390396 - 1390453
Alignment:
Q  205 taacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||| ||| || ||||||||||| ||||||||||||||| |||| ||||||||    
T  1390396 taacatgtttattctaaaataaattaagtttgattgaaatattat-tgatcatttatca 1390453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 31849167 - 31849244
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||| || ||| |||||||||| ||||| | || |||||| ||||||||||||| |||||||| ||| |||||||    
T  31849167 tttttaaactacagactatataacatattttt-ctaaaataaatcaagtgtgattgaagtattatattattgtttatca 31849244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 30850118 - 30850022
Alignment:
Q  166 agggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||| |  |||||||||||  ||||||||| |||||||||  || | ||||| ||| | |||||| |||||||||||  |||||||    
T  30850118 agggagagtttacttttttattttaaattatgaattatataatatgtttttt-taaaacaaatttagtataattgaagtattatatgatcgtttatca 30850022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 33041527 - 33041583
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaa 242  Q
    ||||||||||||||| |||||||  ||||||||  || ||||||||||||||||||||    
T  33041527 tttttaaattatagactatataatgtgtttttt-taaaataaattaagtgtgattgaa 33041583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 12811165 - 12811091
Alignment:
Q  187 tttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||| ||| ||||||| |||||||| | || |||||||||||||||||||| ||  |||||||| |||||||    
T  12811165 tttaaattagagactatataatatgttttt-ctaaaataaattaagtgtgattgaagta-gatatgattgtttatca 12811091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 32922443 - 32922479
Alignment:
Q  227 attaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  32922443 attaagtgtgatcgaagtattatatgattatttatca 32922479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 40196763 - 40196641
Alignment:
Q  141 ggtgtgtttagattgagggtttaggagggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattg 240  Q
    ||||| ||| |||||||||||| ||||||   ||||||||| |||||||||||||  || |||||||||||||||| | || ||||||||||||||||||    
T  40196763 ggtgtatttggattgagggtttgggaggggaggtttactttttgtttttaaattacggaatatataacatgttttt-ctaaaataaattaagtgtgattg 40196665  T
Q  241 aaatattatatgattatttatcag 264  Q
    || |||||||||||| ||||||||    
T  40196664 aagtattatatgattgtttatcag 40196641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 34235243 - 34235117
Alignment:
Q  143 tgtgtttagattgagggtttaggagg------gagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtg 236  Q
    ||||||| ||||||||||||||||||      | | |||||||||   |||||||||||  ||||||||||||||||||||| || ||||||||||||||    
T  34235243 tgtgtttggattgagggtttaggaggagaggagggtgtttacttttcatttttaaattacggattatataacatgttttttctaaaataaattaagtgtg 34235144  T
Q  237 attgaaatattatatgattatttatca 263  Q
    |||||| |||||||||||| |||||||    
T  34235143 attgaagtattatatgattgtttatca 34235117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 131 - 263
Target Start/End: Original strand, 17852873 - 17853005
Alignment:
Q  131 aaactcttaaggtgtgtttagattgagggtttagga-gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaatt 229  Q
    ||||| ||| |||||||||||||||||||||||||| ||||| | |||||||   |||||||||||  ||||| |||||||| |||||| || |||||||    
T  17852873 aaacttttagggtgtgtttagattgagggtttaggaggggagggattacttttcttttttaaattacggattaaataacatg-tttttctaaaataaatt 17852971  T
Q  230 aagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||||  |||||||||||  |||||||    
T  17852972 aagtgtgattgaggtattatatgatcgtttatca 17853005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 263
Target Start/End: Complemental strand, 24970383 - 24970275
Alignment:
Q  155 gagggtttaggaggga-gagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatga 253  Q
    |||||||||||||||| ||||||  |||   |||||||||||| ||||||||||||||||||| | || |||||||||||||||||||| ||||||||||    
T  24970383 gagggtttaggagggaagagtttgtttttcttttttaaattatggattatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatatga 24970285  T
Q  254 ttatttatca 263  Q
    |  |||||||    
T  24970284 tcgtttatca 24970275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 33655295 - 33655218
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||| |  |||||||||||||||| | || |||||||||||||||||||| ||||||||||| ||||||||    
T  33655295 tttttaaattatgggctatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatatgatcatttatca 33655218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 41497162 - 41497067
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||   |||||||||||  || |||||||||||||||| | || ||||||||||||||||||||  |||||||||| ||||||||    
T  41497162 gggagggtttacttttcttttttaaattacggactatataacatgttttt-ctaaaataaattaagtgtgattgaagaattatatgatcatttatca 41497067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 263
Target Start/End: Complemental strand, 37417865 - 37417743
Alignment:
Q  141 ggtgtgtttagattgagggtttagga-gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgatt 239  Q
    ||||||||| |||||||||||||||| ||||  |||||||||   ||||||||| |  || ||||||||||| |||||| ||  ||| ||||||||||||    
T  37417865 ggtgtgtttggattgagggtttaggaggggatggtttacttttcatttttaaataacggactatataacatg-tttttcaaaattaagttaagtgtgatt 37417767  T
Q  240 gaaatattatatgattatttatca 263  Q
    ||| |||||||||||  |||||||    
T  37417766 gaagtattatatgatcgtttatca 37417743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 39856070 - 39855975
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||   |||||||||||  || |||||||||||||||| | || ||||||||||||||| | || ||||||||||| ||||||||    
T  39856070 gggagggtttacttttcttttttaaattacggactatataacatgttttt-ctaaaataaattaagtgtgacttaagtattatatgatcatttatca 39855975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 13771188 - 13771080
Alignment:
Q  141 ggtgtgtttagattgagggtttaggaggg-----------agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaatt 229  Q
    |||||||||||||||||||||||||||||           ||||||||||||  ||||||||||||  || |||||||||||||||||  || |||||||    
T  13771188 ggtgtgtttagattgagggtttaggaggggaagggaggtgagagtttacttttcgtttttaaattacggactatataacatgtttttt-taaaataaatt 13771090  T
Q  230 aagtgtgatt 239  Q
    ||||||||||    
T  13771089 aagtgtgatt 13771080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 41008239 - 41008315
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  || |||||||||||||||||  || ||||||||||||||||||||   |||||||||| |||||||    
T  41008239 tttttaaattacggactatataacatgttttttttaaaataaattaagtgtgattgaa--gttatatgattgtttatca 41008315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 25887265 - 25887326
Alignment:
Q  201 tatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||| | || |||||||||||||||||| | |||||||||||| |||||||    
T  25887265 tatataacatgttttt-ctaaaataaattaagtgtgattggagtattatatgattgtttatca 25887326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 34228489 - 34228436
Alignment:
Q  201 tatataacatgttttttccaagataaattaagtgtgattgaaatattatatgatt 255  Q
    |||||||||||||||| | || |||||||||||||||||||| ||||||||||||    
T  34228489 tatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatatgatt 34228436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 18063711 - 18063671
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  18063711 ataaattaagtgtgattgaagtattatatgatcatttatca 18063671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 43230275 - 43230370
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||   |||||||||||  |||||||||||||| |||||| || |||||||||||| |||||||  |||||| |||  |||||||    
T  43230275 gggagggtttacttttcttttttaaattacggattatataacatg-tttttctaaaataaattaagtgcgattgaagaattatacgatcgtttatca 43230370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 1051658 - 1051608
Alignment:
Q  213 tttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||| || ||||||||||||||||||||  ||||||||||| |||||||    
T  1051658 tttttctaaaataaattaagtgtgattgaagcattatatgattgtttatca 1051608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 18127390 - 18127352
Alignment:
Q  225 aaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  18127390 aaattaagtgtgattgaagtattatatgatcatttatca 18127352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 20393695 - 20393733
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttat 261  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  20393695 ataaattaagtgtgattgaagtattatatgatcatttat 20393733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 22163269 - 22163219
Alignment:
Q  213 tttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||| || |||||||||||||||||||| |||||||||||  |||||||    
T  22163269 tttttctaaaataaattaagtgtgattgaagtattatatgatcgtttatca 22163219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 22221977 - 22221927
Alignment:
Q  213 tttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||| || |||||||||||||||||||| |||||||||||  |||||||    
T  22221977 tttttctaaaataaattaagtgtgattgaagtattatatgatcgtttatca 22221927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 31571675 - 31571578
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataa-attaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||   |||||||||||  ||  |||||||||| |||||  || | || |||||||||||||||| |||||||| ||| |||||||    
T  31571675 gggagagtttacttttcttttttaaattacggaccatataacatgctttttttaaaaaaatattaagtgtgattgaagtattatataattgtttatca 31571578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 47390895 - 47390979
Alignment:
Q  168 ggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatga 253  Q
    |||| |||||||||   ||||||||||||  | ||||||||||| |||||| || ||| ||||| |||||||||| ||||||||||    
T  47390895 ggagggtttacttttcttttttaaattatgaactatataacatg-tttttctaaaatacattaattgtgattgaagtattatatga 47390979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 7791813 - 7791853
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||| ||||||| || ||||||||||||||||||||    
T  7791813 ataaattaaatgtgatttaagtattatatgattatttatca 7791853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 141 - 263
Target Start/End: Complemental strand, 42650573 - 42650446
Alignment:
Q  141 ggtgtgtttagattgagggtttaggag------ggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtg 234  Q
    |||||||||||||||||||||| ||||      ||||||||||||||  ||||||||||||  || |||||||||||||||| | || ||||||||||||    
T  42650573 ggtgtgtttagattgagggtttgggagaggaagggagagtttacttttcgtttttaaattacggaatatataacatgttttt-ctaaaataaattaagtg 42650475  T
Q  235 tgattgaaatattatatgattatttatca 263  Q
    |||||||| |||||||||||| |||||||    
T  42650474 tgattgaagtattatatgattgtttatca 42650446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 263
Target Start/End: Original strand, 37032396 - 37032513
Alignment:
Q  145 tgtttagattgagggtttaggagggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaat 244  Q
    ||||| |||||| |||||||||||||||||||| |||   ||||||||||| ||| |||||||||||||||||  || ||||||||||||||||| || |    
T  37032396 tgtttggattgaaggtttaggagggagagtttatttttcttttttaaattacagactatataacatgtttttt-taaaataaattaagtgtgattaaagt 37032494  T
Q  245 attatatgattatttatca 263  Q
    ||||||||||  |||||||    
T  37032495 attatatgatagtttatca 37032513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 7503159 - 7503064
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||  ||||||||||||| ||||||||||||||| ||||| || ||||||||||||||||| || |||||||||||| |||||||    
T  7503159 gggagggtttacttttcgtttttaaattatggattatataacatgt-ttttctaaaataaattaagtgtgattaaagtattatatgattgtttatca 7503064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 36308847 - 36308977
Alignment:
Q  134 ctcttaaggtgtgtttagattgagggtttaggaggg-agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaag 232  Q
    |||||| ||||||||| |||| ||||||| |||||| || ||| | |||   || ||||| || ||| |||||||||||||||||  || ||||| ||||    
T  36308847 ctcttagggtgtgtttggattaagggtttgggaggggagggttcatttttctttgttaaactagagactatataacatgttttttataaaataaactaag 36308946  T
Q  233 tgtgattgaaatattatatgattatttatca 263  Q
    |||||||||| |||||||||||| |||||||    
T  36308947 tgtgattgaagtattatatgattgtttatca 36308977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 37923265 - 37923188
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||| ||| |||||||||||||||| | || |||||||||||| |||| |||||||||||||| ||||||||    
T  37923265 tttttaaattacagactatataacatgttttt-ctaaaataaattaagtgcgattaaaatattatatgatcatttatca 37923188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 11575611 - 11575516
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||   ||||||||||| | |||||||||||||||||| | || ||||||||||||||||| || |||||||||||  |||||||    
T  11575611 gggagggtttacttttcatttttaaattacaaattatataacatgttttt-ctaaaataaattaagtgtgattaaagtattatatgatcgtttatca 11575516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 16652960 - 16653074
Alignment:
Q  141 ggtgtgtttagattgagggtttaggagggagag--tttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgat 238  Q
    ||||||||| |||||||||||| |||||| |||  ||||||||   |||||||||||  || ||||||||||||||||   || |||||| |||||||||    
T  16652960 ggtgtgtttggattgagggttttggagggggagggtttacttttcttttttaaattacggactatataacatgtttttataaa-ataaatcaagtgtgat 16653058  T
Q  239 tgaaatattatatgat 254  Q
    |||| |||||||||||    
T  16653059 tgaagtattatatgat 16653074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 7979180 - 7979274
Alignment:
Q  168 ggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||||||   |||||||||||  || |||||||||||||||| | || |||||| |||||  |||||| ||||||||||||||||||||    
T  7979180 ggagagtttacttttcttttttaaattacggactatataacatgttttt-ctaaaataaatcaagtgcaattgaagtattatatgattatttatca 7979274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 31543277 - 31543192
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatga 253  Q
    ||||| |||||||||   |||||||||||| ||  ||||||||||||||| | || |||||||||||||||||||| ||||||||||    
T  31543277 gggagggtttacttttcttttttaaattatggaccatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatatga 31543192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 31738461 - 31738557
Alignment:
Q  166 agggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  ||| | ||||||||||| ||| |||||||||||||| | | |  ||||||||||||| |||||| ||||||||||| ||||||||    
T  31738461 agggagagttttttttttttttttaaattacagactatataacatgtttct-ctagaataaattaagtgtaattgaagtattatatgatcatttatca 31738557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 3727058 - 3726975
Alignment:
Q  169 gagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatga 253  Q
    |||||||||||||   |||||| |||| ||| |||||||||||||||| | || ||||||||||  |||||||||||||||||||    
T  3727058 gagagtttacttttcttttttagattacagactatataacatgttttt-ctaaaataaattaagcatgattgaaatattatatga 3726975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 11785554 - 11785660
Alignment:
Q  157 gggtttaggaggg-agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgatt 255  Q
    ||||||||||||| ||||||||||||   ||||||||||||  | ||||||||||| |||||| || ||| ||||| || ||||||| ||||||||| ||    
T  11785554 gggtttaggaggggagagtttacttttcttttttaaattatgaactatataacatg-tttttctaaaatacattaattgcgattgaagtattatatgttt 11785652  T
Q  256 atttatca 263  Q
     |||||||    
T  11785653 gtttatca 11785660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 28083799 - 28083876
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||| |||  ||||||||||||| | | || |||||||||||||||||| | |||||||||||| |||||||    
T  28083799 tttttaaattacagacaatataacatgtttct-ctaaaataaattaagtgtgattggagtattatatgattgtttatca 28083876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 41103693 - 41103616
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||| |   ||||||||||| |||||| || |||||||||||||||||||| |||||||||||  |||||||    
T  41103693 tttttaaattacaagctatataacatg-tttttctaaaataaattaagtgtgattgaagtattatatgatcgtttatca 41103616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 2248509 - 2248576
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatga 253  Q
    |||||||||||  | ||||||||||||||||| | || |||||| ||||||||||| ||||||||||||    
T  2248509 tttttaaattacggtttatataacatgttttt-ctaaaataaatcaagtgtgattggaatattatatga 2248576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 263
Target Start/End: Original strand, 33922521 - 33922654
Alignment:
Q  135 tcttaaggtgtgtttagattgagggtttagga------gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaat 228  Q
    ||||| ||| ||||| ||||||||||||||||      |||||||||||||||   ||||||||||   || |||||||||| ||||||  || ||||||    
T  33922521 tcttagggtatgtttggattgagggtttaggaagggaagggagagtttacttttcttttttaaattccggactatataacatatttttt-taaaataaat 33922619  T
Q  229 taagtgtgattgaaatattatatgattatttatca 263  Q
    | ||| |||||||| ||| |||||||| |||||||    
T  33922620 ttagtatgattgaagtatgatatgattgtttatca 33922654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 4874490 - 4874452
Alignment:
Q  225 aaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  4874490 aaattaagtgtgattgaaatattacatgattatatatca 4874452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 6315135 - 6315196
Alignment:
Q  201 tatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||| | || |||||||||||||||||||| ||||||| |||  |||||||    
T  6315135 tatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatacgatcgtttatca 6315196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 30581958 - 30581920
Alignment:
Q  225 aaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  30581958 aaattaagtgtgattgaagtattatatgatcatttatca 30581920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 30664418 - 30664483
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatat 251  Q
    ||||||||||  ||| | |||||||||||||| | || |||||||||||||||||||| ||||||||    
T  30664418 tttttaaattgcagactttataacatgttttt-caaaaataaattaagtgtgattgaagtattatat 30664483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 24243194 - 24243157
Alignment:
Q  226 aattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  24243194 aattaagtgtgattgaagtattatatgatcatttatca 24243157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 40990371 - 40990303
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgat 254  Q
    |||||||||||  || |||||||||||||| ||  || ||||||||||| |||||||| |||||||||||    
T  40990371 tttttaaattacggactatataacatgtttctttaaa-ataaattaagtctgattgaagtattatatgat 40990303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 9718684 - 9718589
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||| ||||||||||   ||||||||||||  | |||||||||| ||||| | || ||  ||||| |||||||||| |||||||||||| |||||||    
T  9718684 gggaaagtttacttttcttttttaaattatgaactatataacatattttt-ctaaaattcattaattgtgattgaagtattatatgattgtttatca 9718589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 16838159 - 16838187
Alignment:
Q  226 aattaagtgtgattgaaatattatatgat 254  Q
    |||||||||||||||||||||||||||||    
T  16838159 aattaagtgtgattgaaatattatatgat 16838187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 651742 - 651852
Alignment:
Q  141 ggtgtgtttagattgagggtttaggagggagag--tttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgat 238  Q
    ||||||||| ||||||||||||||||||| |||  ||||||||   ||||||||||||||| ||||||||||| |||||| || ||||||||||||||||    
T  651742 ggtgtgtttggattgagggtttaggagggggagggtttacttttcttttttaaattatagactatataacatg-tttttctaaaataaattaagtgtgat 651840  T
Q  239 tgaaatattata 250  Q
    | ||||||||||    
T  651841 taaaatattata 651852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 263
Target Start/End: Original strand, 52185029 - 52185150
Alignment:
Q  143 tgtgtttagattgagggtttaggaggg-agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattga 241  Q
    ||||||| ||||||| |||| | |||| | ||||||||||  |||||||||||| | |||||||||||||||||||| || ||||||||| | | |||||    
T  52185029 tgtgtttggattgagagtttggaaggggatagtttacttttcgtttttaaattacaaattatataacatgttttttctaaaataaattaaatataattga 52185128  T
Q  242 aatattatatgattatttatca 263  Q
    | |||||||||||| |||||||    
T  52185129 agtattatatgattgtttatca 52185150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 37102381 - 37102267
Alignment:
Q  141 ggtgtgtttagattgagggtttaggagggagag-tttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgatt 239  Q
    ||||||||| |||||||||||||||||||  || |||||||    |||||||||||  || |||||||||||||||||| || |||||| ||||||| ||    
T  37102381 ggtgtgtttggattgagggtttaggaggggaaggtttacttatcttttttaaattacggactatataacatgttttttctaaaataaatcaagtgtggtt 37102282  T
Q  240 gaaatattatatgat 254  Q
    ||| |||||||||||    
T  37102281 gaagtattatatgat 37102267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 46556160 - 46556265
Alignment:
Q  146 gtttagattgagggtttaggaggg-agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaat 244  Q
    |||| ||||||||||||||||||| |||||||| |||   ||||||||||| ||| ||||||| |||||||| |||| ||||||| |||||||||||| |    
T  46556160 gtttggattgagggtttaggaggggagagtttaattttcttttttaaattacagactatataatatgttttt-ccaaaataaattgagtgtgattgaagt 46556258  T
Q  245 attatat 251  Q
    |||||||    
T  46556259 attatat 46556265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 41110520 - 41110431
Alignment:
Q  173 gtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||  ||||||||||||  || || ||||||||||||| | || |||||||||||||||||||| |||||||||||| |||||||    
T  41110520 gtttacttttcgtttttaaattacggactagataacatgttttt-cgaaaataaattaagtgtgattgaagtattatatgattgtttatca 41110431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 46204943 - 46205017
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattattta 260  Q
    ||||||||||||  | |||||||||||||||| | || |||||||||||||||||||| ||||||||||| |||||    
T  46204943 tttttaaattatgaactatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatatgatcattta 46205017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 14898033 - 14898101
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgat 254  Q
    ||||||||||| ||| ||||| |||||||||| | || |||||||||||||||||||| |||||||||||    
T  14898033 tttttaaattacagactatatgacatgttttt-ctaaaataaattaagtgtgattgaagtattatatgat 14898101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 263
Target Start/End: Complemental strand, 2387992 - 2387870
Alignment:
Q  141 ggtgtgtttagattgagggtttaggaggg-agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgatt 239  Q
    ||||||||| |||||||||||| |||||| || |||||||||   ||| ||||| |  |  |||||||||||||||| | || |||||||||||||||||    
T  2387992 ggtgtgtttggattgagggtttgggaggggagggtttacttttcttttctaaatcacggtctatataacatgttttt-ctaaaataaattaagtgtgatt 2387894  T
Q  240 gaaatattatatgattatttatca 263  Q
     || |||||||||||  |||||||    
T  2387893 aaattattatatgatcgtttatca 2387870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 18654787 - 18654710
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  || |||||||||||||| | | || ||||||||||||| |||||| ||||||||||| ||||||||    
T  18654787 tttttaaattacggactatataacatgtttct-ctaaaataaattaagtgtaattgaagtattatatgatcatttatca 18654710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 21773855 - 21773916
Alignment:
Q  201 tatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||| | || ||||||||||||||||||||  ||||||||||| |||||||    
T  21773855 tatataacatgttttt-ctaaaataaattaagtgtgattgaagaattatatgattgtttatca 21773916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 25655159 - 25655094
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatat 251  Q
    |||||||||||  || |||||||||||||||| | || |||||||||||||||||||| ||||||||    
T  25655159 tttttaaattacggactatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatat 25655094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 24560274 - 24560351
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  || ||| |||||||||||| | || ||||||||| |||||||||| |||||||||||  |||||||    
T  24560274 tttttaaattacggactatgtaacatgttttt-ctaaaataaattaaatgtgattgaagtattatatgatcgtttatca 24560351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 27542118 - 27542041
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||||  | |||||||||| ||||| | || ||||||||| |||||||||| |||||||||||  |||||||    
T  27542118 tttttaaattatgaactatataacatattttt-ctaaaataaattaactgtgattgaagtattatatgatcgtttatca 27542041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 36569063 - 36569013
Alignment:
Q  213 tttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||| || |||||||||||||||||||| ||||||| |||| |||||||    
T  36569063 tttttctaaaataaattaagtgtgattgaactattatacgattgtttatca 36569013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 41040149 - 41040060
Alignment:
Q  173 gtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||  | ||||||||||  ||||| |||||||| |||||  || ||||| |||| ||||||||| |||||||||||| |||||||    
T  41040149 gtttacttttcgcttttaaattacggattagataacatgattttttaaa-ataaagtaagcgtgattgaagtattatatgattgtttatca 41040060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 52473972 - 52474049
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  |||||||||||||||| |||  || ||||||||  |||||||||| |||||||||| | |||||||    
T  52473972 tttttaaattacggattatataacatgttattt-taaaataaattacatgtgattgaagtattatatgactgtttatca 52474049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 16275875 - 16275815
Alignment:
Q  202 atataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||||||| | || |||||| ||||||||||||| ||||||||| || |||||||    
T  16275875 atataacatgttttt-ctaaaataaatcaagtgtgattgaagtattatatggttgtttatca 16275815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 10748484 - 10748417
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatga 253  Q
    |||||||||||  || |||||||||||||||| | || ||||||||||||||||  || ||||||||||    
T  10748484 tttttaaattacggagtatataacatgttttt-ctaaaataaattaagtgtgataaaagtattatatga 10748417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 28582714 - 28582631
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatat 251  Q
    ||||| |||||||||   |||||||||||  ||  ||||||||||| ||||| ||||||||| ||||||| ||||| ||||||||    
T  28582714 gggagggtttacttttcttttttaaattacggacgatataacatgt-ttttctaagataaatcaagtgtggttgaagtattatat 28582631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 48683706 - 48683746
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||  ||||||||||||||||| ||||||||    
T  48683706 ataaattaagtgtttttgaaatattatatgatcatttatca 48683746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 40095133 - 40095043
Alignment:
Q  173 gtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||  |||||||||||| ||| |||||||||||||||||| || |||||||||||||||||||| |||||||||||  |||||||    
T  40095133 gtttacttttcgtttttaaattacagactatataacatgttttttctaaaataaattaagtgtgattgaagtattatatgatcgtttatca 40095043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 8529811 - 8529924
Alignment:
Q  141 ggtgtgtttagattgagggtttaggaggg-agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgatt 239  Q
    |||| |||| ||||||||||||||||||| || |||||||||   ||||||||||| | | |||||||||||||||||  || |||||||||||||||||    
T  8529811 ggtgcgtttggattgagggtttaggaggggagggtttacttttcttttttaaattacaaactatataacatgttttttttaa-ataaattaagtgtgatt 8529909  T
Q  240 gaaatattatatgat 254  Q
    ||| |||||||||||    
T  8529910 gaagtattatatgat 8529924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 51597707 - 51597802
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||   ||||||||| |  || |||||||||||||||||  || |||||||||||||||||||| |||||||||||| |||||||    
T  51597707 gggagagtttacttttcttttttaaatcacggactatataacatgtttttttaaa-ataaattaagtgtgattgaagtattatatgattgtttatca 51597802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 2859137 - 2859044
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttat 261  Q
    ||||| |||||||||   |||||||||||  || |||||||||||||||| | || |||||||||||||||||||| |||||||||||| |||||    
T  2859137 gggagggtttacttttattttttaaattacggactatataacatgttttt-caaaaataaattaagtgtgattgaagtattatatgattgtttat 2859044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 42230578 - 42230670
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttat 261  Q
    |||||| |||||||| | |||| ||||||| |||||| |||||||||||||  || |||||||||||||||||||| |||||||||||| |||||    
T  42230578 gggagaatttacttttt-ttttaaaattattgattatttaacatgttttttaaaa-ataaattaagtgtgattgaagtattatatgattgtttat 42230670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 32951523 - 32951428
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||  ||||||||||||  || |||| ||||||||||| | || |||||||||||||||||||| ||||||| |||  |||||||    
T  32951523 gggagagtttacttttcgtttttaaattacggactatagaacatgttttt-ctaaaataaattaagtgtgattgaagtattatacgatcgtttatca 32951428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 35349667 - 35349572
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||  ||||||||||||  || |||||||||| ||||||| || ||||| |||| || |||||| |||||||||||| |||||||    
T  35349667 gggagggtttacttttcgtttttaaattacggactatataacat-ttttttctaaaataaactaagggttattgaagtattatatgattgtttatca 35349572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 26941080 - 26940963
Alignment:
Q  136 cttaaggtgtgtttagattgagggtttaggagggagagttt-actttatgtttttaaattatagattatataacatgttttttccaagataaattaagtg 234  Q
    |||| ||||||||| |||||||||||||||||||  || || | |||   |||||||| ||  |||| |||||||||||||| | || |||||| |||||    
T  26941080 cttagggtgtgtttggattgagggtttaggaggggaaggttcaattttcttttttaaaatacggattctataacatgttttt-ctaaaataaatcaagtg 26940982  T
Q  235 tgattgaaatattatatga 253  Q
    |||||||| ||||||||||    
T  26940981 tgattgaagtattatatga 26940963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 49946759 - 49946698
Alignment:
Q  201 tatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||||  || ||||||||| |||||||||| ||||||||||| ||||||||    
T  49946759 tatataacatgtttttttaaa-ataaattaaatgtgattgaagtattatatgataatttatca 49946698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 44211139 - 44211015
Alignment:
Q  139 aaggtgtgtttagattgagggtttaggagggagag-tttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtga 237  Q
    |||| |||||| ||| |||||||||||||||  || ||||| ||   ||| ||||||| ||  |||||||| ||||||| | || |||||||||||||||    
T  44211139 aaggcgtgtttggatcgagggtttaggaggggaagatttacatttcttttataaattacagtctatataacgtgttttt-ctaaaataaattaagtgtga 44211041  T
Q  238 ttgaaatattatatgattatttatca 263  Q
    ||||| |||||||||||  |||||||    
T  44211040 ttgaagtattatatgatcgtttatca 44211015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 50744503 - 50744391
Alignment:
Q  151 gattgagggtttaggaggg-agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattat 249  Q
    ||||||||||||||||||| || ||||  |||   |||||||||||  || ||||||||| |||| | | || |||||||||||||||||||| ||||||    
T  50744503 gattgagggtttaggaggggagggtttgtttttcttttttaaattacggactatataacaggtttct-ctaaaataaattaagtgtgattgaagtattat 50744405  T
Q  250 atgattatttatca 263  Q
    |||||  |||||||    
T  50744404 atgatcgtttatca 50744391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 41498443 - 41498538
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||  |||||||||||||  | ||| ||||||| |||| | | ||||| ||||||||||||||| |||||||||||  |||||||    
T  41498443 gggagggtttacttttcgtttttaaattatgaactatttaacatgatttt-ctacgataagttaagtgtgattgaagtattatatgatcgtttatca 41498538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 30010391 - 30010457
Alignment:
Q  187 tttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgat 254  Q
    |||||||||  || |||||||||||||||| | || |||||||||||||| ||||| |||||||||||    
T  30010391 tttaaattacggactatataacatgttttt-ctaaaataaattaagtgtggttgaagtattatatgat 30010457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 42742478 - 42742420
Alignment:
Q  203 tataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||  || |||||||||||||||||||| || ||||||| |||||||||    
T  42742478 tataaaatgtttttt--aaaataaattaagtgtgattgaagtactatatgactatttatca 42742420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 46218105 - 46218137
Alignment:
Q  226 aattaagtgtgattgaaatattatatgattatt 258  Q
    |||||||||| ||||||||||||||||||||||    
T  46218105 aattaagtgtaattgaaatattatatgattatt 46218137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 49065549 - 49065589
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||||||| ||||||||||  ||||||||    
T  49065549 ataaattaagtgtgattgaagtattatatgaaaatttatca 49065589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 9856892 - 9857005
Alignment:
Q  141 ggtgtgtttagattgagggtttaggaggg-agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgatt 239  Q
    ||||||||| ||||||||||||||||||| |||||||| |||   |||||||||||  || |||||||||||||||| | || |||||| ||||||||||    
T  9856892 ggtgtgtttggattgagggtttaggaggggagagtttagttttcttttttaaattaaggactatataacatgttttt-ctaaaataaatcaagtgtgatt 9856990  T
Q  240 gaaatattatatgat 254  Q
    ||| |||||||||||    
T  9856991 gaagtattatatgat 9857005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 28279664 - 28279586
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||| || |||||||||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||    
T  28279664 tttttaaattatggaatatataacatgttttttctaaaataaactaagtgtgattgaagtattatatgatcatttatca 28279586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 4373753 - 4373676
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  || ||||||||| |||||||  || |||||||||||||||||||||||||||||||| ||||||||    
T  4373753 tttttaaattacggactatataacaagttttttaaaa-ataaattaagtgtgattgaaatattatatgatcatttatca 4373676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 16938552 - 16938613
Alignment:
Q  201 tatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||| | | || |||||||||||||||||||||||||||||||| ||||||||    
T  16938552 tatataacatgtttct-ctaaaataaattaagtgtgattgaaatattatatgatcatttatca 16938613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 39965992 - 39966053
Alignment:
Q  136 cttaaggtgtgtttagattgagggtttagga-gggagagtttactttatgtttttaaattat 196  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||    
T  39965992 cttagggtgtgtttagatagagggtttaggaggggagagtttactttttatttttaaattat 39966053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 7544193 - 7544268
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttat 261  Q
    |||||||||||  || |||||||||||||||| | || |||||| ||||||||||||| |||||||||||| |||||    
T  7544193 tttttaaattacggactatataacatgttttt-ctaaaataaatcaagtgtgattgaagtattatatgattgtttat 7544268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 14681526 - 14681603
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||| |||||||||||||||||||||  || ||||||||| ||||||||||  | ||||||| | |||||||    
T  14681526 tttttaaattacagattatataacatgtttttt-taaaataaattaaatgtgattgaaggaatatatgactgtttatca 14681603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 9798799 - 9798731
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgat 254  Q
    |||| |||||| ||||||||||||||||||||   || ||||||||| |||||||||| |||||||||||    
T  9798799 ttttaaaattacagattatataacatgtttttcttaa-ataaattaattgtgattgaagtattatatgat 9798731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 26414932 - 26415016
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatg 252  Q
    ||||| |||||||||  ||||||||||||  || ||||| |||||||||| | || ||| |||||||||||||||| |||||||||    
T  26414932 gggagggtttacttttcgtttttaaattacggactatatgacatgttttt-ctaaaatatattaagtgtgattgaagtattatatg 26415016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 13634750 - 13634845
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||   ||||||||| |  || |||||||||||||||| | || |||||||| ||||||||||| |||||||||||  |||||||    
T  13634750 gggagggtttacttttcttttttaaataacggactatataacatgttttt-ctaaaataaattatgtgtgattgaattattatatgatcgtttatca 13634845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 14684632 - 14684592
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  14684632 ataaattaagtgtgattgaaatattatatacttatttatca 14684592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 10476084 - 10476150
Alignment:
Q  185 tttttaaattatagattatata-acatgttttttccaagataaattaagtgtgattgaaatattatat 251  Q
    |||| |||||| |||||||||| |||||||||| | || |||||||||||||||||||| ||||||||    
T  10476084 ttttaaaattacagattatatatacatgttttt-ctaaaataaattaagtgtgattgaagtattatat 10476150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 22022907 - 22022977
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgatta 256  Q
    |||||||||||  || |||||||||| ||||| | || ||||||||||||||||||||| |||||| |||||    
T  22022907 tttttaaattacggactatataacatattttt-ctaaaataaattaagtgtgattgaaagattataggatta 22022977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 37551452 - 37551541
Alignment:
Q  172 agtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||  ||||||||||||| || ||||||| | |||||||  || |||||||| ||||||||||| |||||||||||  |||||||    
T  37551452 agtttacttttcgtttttaaattatggactatataaaa-gttttttaaaa-ataaattatgtgtgattgaagtattatatgatcgtttatca 37551541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 37654282 - 37654371
Alignment:
Q  172 agtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||  ||||||||||||| || ||||||| | |||||||  || |||||||| ||||||||||| |||||||||||  |||||||    
T  37654282 agtttacttttcgtttttaaattatggactatataaaa-gttttttaaaa-ataaattatgtgtgattgaagtattatatgatcgtttatca 37654371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 2550523 - 2550462
Alignment:
Q  201 tatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||| | |  |||||||| ||||||||||| |||||||||||| |||||||    
T  2550523 tatataacatgttttt-ctataataaattacgtgtgattgaagtattatatgattgtttatca 2550462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 27110122 - 27110160
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttat 261  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  27110122 ataaattaagtgtgattaaaatattatatgatcatttat 27110160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 37606936 - 37607028
Alignment:
Q  169 gagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||  ||||||||||||  || ||||||| |||||||||  || ||||||||  |||||||||| |||||||||||  |||||||    
T  37606936 gagagtttacttttcgtttttaaattaaggactatataa-atgtttttttaaa-ataaattatatgtgattgaagtattatatgatcgtttatca 37607028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 39966139 - 39966070
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgatt 255  Q
    |||||||||||  ||||||||||||| ||||||  || |||||||||  ||||||||| ||||||||||||    
T  39966139 tttttaaattacggattatataacatattttttttaa-ataaattaaacgtgattgaattattatatgatt 39966070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 40815354 - 40815430
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||| ||| ||||||||||||||||   || |||||  |||||||||||||||||||||| ||| |||||||    
T  40815354 tttttaaattacagactatataacatgtttttataaa-ataaaa-aagtgtgattgaaatattatataattgtttatca 40815430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 43433 - 43481
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagt 233  Q
    |||||||||||  ||||||||||||||||||||  || |||||||||||    
T  43433 tttttaaattagggattatataacatgttttttttaaaataaattaagt 43481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 10072816 - 10072757
Alignment:
Q  203 tataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||| | || ||||||||||| |||||||| |||||||||||  |||||||    
T  10072816 tataacatgttttt-ctaaaataaattaagtatgattgaagtattatatgatcgtttatca 10072757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 11756950 - 11757009
Alignment:
Q  201 tatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttat 261  Q
    |||||||||||||| | | || ||||||||||||||||| || ||||||||||| ||||||    
T  11756950 tatataacatgtttct-ctaaaataaattaagtgtgattaaagtattatatgatcatttat 11757009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 16501978 - 16501902
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttat 261  Q
    |||||||||||  || |||||| ||| ||||||| || |||||| |||||||||| || | ||||||||| ||||||    
T  16501978 tttttaaattacggactatatatcatattttttctaaaataaatcaagtgtgattaaagttttatatgatcatttat 16501902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 20147013 - 20146985
Alignment:
Q  226 aattaagtgtgattgaaatattatatgat 254  Q
    |||||||||||||||||||||||||||||    
T  20147013 aattaagtgtgattgaaatattatatgat 20146985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 37740079 - 37740001
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||  |||||||||||||||||||||| || |||||||||||||||||||| |||||||||||  |||||||    
T  37740079 tttttaaattccagattatataacatgttttttctaaaataaattaagtgtgattgaagtattatatgatcgtttatca 37740001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 36347747 - 36347651
Alignment:
Q  166 agggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||||||||   |||||||||||  || |||||||||||||||| | || |||||||||||||||||||| |||||||| ||| |||||||    
T  36347747 agggagagtttacttttcttttttaaattacggactatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatataattgtttatca 36347651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 8427076 - 8426981
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||   |||||||| || |||  ||||||||||||||| | || |||||||||||| ||||||| ||||||||||| ||||||||    
T  8427076 gggagagtttacttttcatttttaaagtacagacgatataacatgttttt-ctaaaataaattaagtgcgattgaagtattatatgatcatttatca 8426981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 36567039 - 36566961
Alignment:
Q  184 gtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||  |||||||||||||||||| | |  ||||||||| |||||||||| ||||||||||| ||||||||    
T  36567039 gtttttaaattatgaattatataacatgttttt-ctataataaattaattgtgattgaagtattatatgatcatttatca 36566961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 32503229 - 32503293
Alignment:
Q  198 gattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||||| ||||| | || ||||||||||| ||||| |||||||||||||||||||||||    
T  32503229 gattatataacatattttt-ctaaaataaattaagtatgattaaaatattatatgattatttatca 32503293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 263
Target Start/End: Original strand, 12541773 - 12541900
Alignment:
Q  142 gtgtgtttagattgagggtttaggaggg------agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgt 235  Q
    |||||||| |||||||||||||||||||      ||||| ||||||   |||||||||||  || ||||||| || ||||||| || ||||||||||||     
T  12541773 gtgtgtttggattgagggtttaggaggggaggggagagtctacttttcttttttaaattacggactatataaaatattttttctaaaataaattaagtgc 12541872  T
Q  236 gattgaaatattatatgattatttatca 263  Q
    ||||||| || ||||||||  |||||||    
T  12541873 gattgaagtactatatgatcgtttatca 12541900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 18811422 - 18811462
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  18811422 ataaattaagtgtgattgaaatattatatgattgtttatca 18811462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 28262644 - 28262553
Alignment:
Q  171 gagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||   |||||||||||| || |||||||||||| ||||| || ||||||||  |||||||||||||||| |||||  |||||||    
T  28262644 gagtttacttttcttttttaaattattgactatataacatgt-ttttctaaaataaattacatgtgattgaaatattacatgatcgtttatca 28262553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 39821708 - 39821803
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||   |||||||||||| |||| ||||||||| |||||| || |||||||||||| |||| || ||||||| ||| ||||||||    
T  39821708 gggagggtttacttttcatttttaaattatggattctataacatg-tttttctaaaataaattaagtgcgatttaagtattataagatcatttatca 39821803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 19567057 - 19566944
Alignment:
Q  142 gtgtgtttagattgagggtttaggag------ggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgt 235  Q
    |||||||| |||||||||||||||||      |||| ||||| |||   |||||||||||  || |||||||||||||||| | || |||||||||||||    
T  19567057 gtgtgtttggattgagggtttaggagaggaggggagggtttaatttcattttttaaattacggactatataacatgttttt-ctaaaataaattaagtgt 19566959  T
Q  236 gattgaaatattata 250  Q
    ||||||| |||||||    
T  19566958 gattgaagtattata 19566944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 251
Target Start/End: Original strand, 23748107 - 23748217
Alignment:
Q  141 ggtgtgtttagattgagggtttaggaggg-agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgatt 239  Q
    ||||||||| ||| ||||||||||||||| || ||||| |||   |||||||| ||  || |||||||||||||||| | || |||||| ||||||||||    
T  23748107 ggtgtgtttggatcgagggtttaggaggggagggtttagttttcttttttaaactacggactatataacatgttttt-caaaaataaatcaagtgtgatt 23748205  T
Q  240 gaaatattatat 251  Q
    ||| ||||||||    
T  23748206 gaagtattatat 23748217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 40022427 - 40022501
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattattta 260  Q
    ||||||||||||  | ||||||||||||||||   || |||||||||||||||||||| |||||||||||| ||||    
T  40022427 tttttaaattatgaactatataacatgtttttgtaaa-ataaattaagtgtgattgaagtattatatgattgttta 40022501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 42537894 - 42537859
Alignment:
Q  226 aattaagtgtgattgaaatattatatgattatttat 261  Q
    ||||||||||||||||||||||||||||||||||||    
T  42537894 aattaagtgtgattgaaatattatatgattatttat 42537859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 15224881 - 15224804
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  |  ||||||||||| |||||| |  |||||||||||||||||||| ||||||||||| ||||||||    
T  15224881 tttttaaattacgggctatataacatg-tttttctagaataaattaagtgtgattgaagtattatatgatcatttatca 15224804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 16565850 - 16565911
Alignment:
Q  201 tatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||| | || |||||||||||||||||||| |||||||||||  |||||||    
T  16565850 tatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatatgatcgtttatca 16565911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 12751887 - 12751940
Alignment:
Q  201 tatataacatgttttttccaagataaattaagtgtgattgaaatattatatgat 254  Q
    |||||||||| ||||||| || |||| ||||||||||||||| |||||||||||    
T  12751887 tatataacatattttttctaaaataatttaagtgtgattgaagtattatatgat 12751940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 2241449 - 2241544
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||||||| |  || |||||||  || ||||||| | |||||| | || ||||||||||||| |||||| |||||||||||| |||||||    
T  2241449 gggagagtttacttttttattataaattacggactatataatacgttttt-ctaaaataaattaagtgtaattgaagtattatatgattgtttatca 2241544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 39354380 - 39354293
Alignment:
Q  166 agggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgat 254  Q
    |||||||||||||||| | ||||||||||| |  |||||||||||| ||| || || ||||| | |||||||||||| ||||| |||||    
T  39354380 agggagagtttactttttttttttaaattacaagttatataacatg-tttatctaaaataaagttagtgtgattgaagtattacatgat 39354293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 7681259 - 7681373
Alignment:
Q  140 aggtgtgtttagattgagggtttaggagggaga-gtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgat 238  Q
    |||||||||| |||| ||||||||||||||  | ||||  |||   ||||| |||||  |||||||||| | |||||||  || ||||||||||||||||    
T  7681259 aggtgtgtttggatttagggtttaggaggggaatgtttgtttttcattttttaattacggattatataata-gttttttgtaaaataaattaagtgtgat 7681357  T
Q  239 tgaaatattatatgat 254  Q
    |||| |||||||||||    
T  7681358 tgaagtattatatgat 7681373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 31795937 - 31795879
Alignment:
Q  204 ataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||||||  || |||||||||||||||||||| |||||||||||  |||||||    
T  31795937 ataacatgtttttttaaa-ataaattaagtgtgattgaagtattatatgatcgtttatca 31795879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 41778867 - 41778906
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttatc 262  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  41778867 ataaattaagtgtgattgaagtattatatgatcatttatc 41778906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 6721782 - 6721732
Alignment:
Q  213 tttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||| || |||||| |||||||||||||||||||||| || ||||||||    
T  6721782 tttttctaaaataaatcaagtgtgattgaaatattatattatcatttatca 6721732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 17379897 - 17379946
Alignment:
Q  214 ttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| || |||||||||||||||||| | |||||||||||| |||||||    
T  17379897 ttttctaaaataaattaagtgtgattggagtattatatgattgtttatca 17379946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 39732926 - 39732839
Alignment:
Q  174 tttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||  ||||||||||||  || |||||| ||||||||| | || ||||||||||| |||||||| |||||||||||  |||||||    
T  39732926 tttacttttcgtttttaaattacggactatata-catgttttt-ctaaaataaattaagtatgattgaagtattatatgatcgtttatca 39732839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 887010 - 887050
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||| ||||||||||| ||||||||||| ||||||||    
T  887010 ataaattatgtgtgattgaagtattatatgatcatttatca 887050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 20545803 - 20545839
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattattt 259  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  20545803 ataaattaaatgtgattgaagtattatatgattattt 20545839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 31061453 - 31061493
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||  ||||||||||||||||| ||||||||    
T  31061453 ataaattaagtgtttttgaaatattatatgatcatttatca 31061493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 35248743 - 35248820
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  || |||||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||    
T  35248743 tttttaaattacggactatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatatgattatttatca 35248820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 27735802 - 27735879
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  || |||||||||||||||||  || |||||||||||||||||||| ||||||||||| ||||||||    
T  27735802 tttttaaattacggactatataacatgtttttttaaa-ataaattaagtgtgattgaagtattatatgatcatttatca 27735879  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 17938311 - 17938217
Alignment:
Q  169 gagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||   ||||||||||| | | |||||||||| ||||||   | |||||||||||||||||||| |||||||||||  |||||||    
T  17938311 gagagtttacttttcttttttaaattacaaactatataacatatttttttttaaataaattaagtgtgattgaagtattatatgatcgtttatca 17938217  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 26166994 - 26167071
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||| ||| |||||||||||||| | | || |||||||||||||||||||| |||||||||||  |||||||    
T  26166994 tttttaaattacagactatataacatgtttct-ctaaaataaattaagtgtgattgaagtattatatgatcgtttatca 26167071  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 36151637 - 36151710
Alignment:
Q  189 taaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||| ||| |||||||||||||||| | || |||||||||||||||||||| |||||||||||  |||||||    
T  36151637 taaattacagactatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatatgatcgtttatca 36151710  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 37711200 - 37711277
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  || |||||||||||||| | | || |||||||||||||||||||| ||||||||||| ||||||||    
T  37711200 tttttaaattacggactatataacatgtttct-ctaaaataaattaagtgtgattgaagtattatatgatcatttatca 37711277  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 6891417 - 6891485
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgat 254  Q
    |||||||| || | |||||||||||||||||| | || |||||||||||||||||||| |||||||||||    
T  6891417 tttttaaaatacaaattatataacatgttttt-ctaaaataaattaagtgtgattgaagtattatatgat 6891485  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 31348526 - 31348431
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||   ||||||||| |  || |||||||||||||||| | || |||||||| ||||||||||| |||||||||||| |||||||    
T  31348526 gggagggtttacttttcttttttaaataacggactatataacatgttttt-ctaaaataaattatgtgtgattgaattattatatgattgtttatca 31348431  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 47433913 - 47433827
Alignment:
Q  168 ggagagtttactttatgtttttaaattatagattata-taacatgttttttccaagataaattaagtgtgattgaaatattatatgat 254  Q
    |||| |||||||||   ||||||||||| ||| |||| |||||||||||||  || |||||||||||||||||||| |||||||||||    
T  47433913 ggagggtttacttttcttttttaaattacagactataataacatgtttttttaaa-ataaattaagtgtgattgaagtattatatgat 47433827  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 5731017 - 5730940
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  || |||||||||||||| | | || ||||||||||||| |||||| ||||||||||| ||||||||    
T  5731017 tttttaaattacggactatataacatgtttct-ctaaaataaattaagtgtaattgaagtattatatgatcatttatca 5730940  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 54320491 - 54320568
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  || |||||| ||||||||| | || |||||||||||||||||| | |||||||||||| |||||||    
T  54320491 tttttaaattaccgactatatatcatgttttt-ctaaaataaattaagtgtgattggagtattatatgattgtttatca 54320568  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 46007906 - 46007811
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||| |||||||||   ||||||||||  ||| |||||||| |||||||   || |||||||||||| ||||||| ||||||||||| ||||||||    
T  46007906 gggagggtttacttttcttttttaaattgcagactatataacttgtttttgtaaa-ataaattaagtgagattgaagtattatatgatcatttatca 46007811  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 34111036 - 34110981
Alignment:
Q  141 ggtgtgtttagattgagggtttagga-gggagagtttactttatgtttttaaatta 195  Q
    ||||||||||||| |||||||||||| ||||| ||||||||| | |||||||||||    
T  34111036 ggtgtgtttagatggagggtttaggaggggagggtttactttttatttttaaatta 34110981  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 2248007 - 2247913
Alignment:
Q  166 agggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||||||||||   ||||||||||| |||| |||||||||||||||  | | | ||| || ||||||||||| |||||||| ||| |||||||    
T  2248007 agggagagtttacttttcttttttaaattacagat-atataacatgttttt--ctaaaaaaaatatgtgtgattgaagtattatataattgtttatca 2247913  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 41227576 - 41227614
Alignment:
Q  225 aaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  41227576 aaattaagtgtgattgaagtattatatgatcatttatca 41227614  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 45741947 - 45742024
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||  || |||||||| ||||||| | || ||||||||| |||||||||| |||||||||||  |||||||    
T  45741947 tttttaaattacggactatataacttgttttt-ctaaaataaattaaatgtgattgaagtattatatgatcgtttatca 45742024  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 47846218 - 47846165
Alignment:
Q  210 tgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    ||||||||  || |||||||||||||  ||||| ||||||||||||||||||||    
T  47846218 tgttttttttaaaataaattaagtgtttttgaagtattatatgattatttatca 47846165  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 54935107 - 54935203
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaata-ttatatgattatttatca 263  Q
    ||||| |||||||||   |||||||||||   | |||||||||||||||| | || |||||||||||||||||||| || |||||||||  |||||||    
T  54935107 gggagggtttacttttcttttttaaattacgaactatataacatgttttt-ctaaaataaattaagtgtgattgaagtatttatatgatcgtttatca 54935203  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 45132651 - 45132611
Alignment:
Q  223 ataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||||||||||||||| |||||||||||  |||||||    
T  45132651 ataaattaagtgtgattgaagtattatatgatcgtttatca 45132611  T

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Target: scaffold0262 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 263
Target Start/End: Complemental strand, 16535 - 16406
Alignment:
Q  134 ctcttaaggtgtgtttagattgagggtttaggaggg-agagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaag 232  Q
    |||||| |||||||||  |||||| |||| | |||| || |||||||||  |||||||| | |  || |||||||||||||| | | || ||||||||||    
T  16535 ctcttagggtgtgtttgaattgagagtttggaaggggagggtttacttttcgtttttaactcacggactatataacatgtttgt-ctaaaataaattaag 16437  T
Q  233 tgtgattgaaatattatatgattatttatca 263  Q
    |||||||||| |||||||||||| |||||||    
T  16436 tgtgattgaagtattatatgattgtttatca 16406  T

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Target: scaffold0294 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 15320 - 15397
Alignment:
Q  185 tttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgattatttatca 263  Q
    |||||||| ||  ||||| ||||||||||||| | || |||||||||||||| ||||| |||||||||||| |||||||    
T  15320 tttttaaactacggattacataacatgttttt-ctaaaataaattaagtgtggttgaagtattatatgattgtttatca 15397  T

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Target: scaffold0096 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 6623 - 6709
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatattatatgat 254  Q
    ||||| |||||||||   ||||||||||| ||| |||||||| |||| || | || ||||||| |||||||||||| |||||||||||    
T  6623 gggagggtttacttttcttttttaaattacagactatataacttgttatt-ctaaaataaatttagtgtgattgaagtattatatgat 6709  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 184603 - 184690
Alignment:
Q  131 aaactcttaaggtgtgtttagattgagggtttagga-gggagagtttactttatgtttttaaattatagattatataacatgtttttt 217  Q
    |||| |||| ||||||||| |||||||||||||||| ||||| ||| |||||   ||||||||||||  | ||||||| |||||||||    
T  184603 aaacacttagggtgtgtttggattgagggtttaggaggggagggttcacttttattttttaaattatgaactatataaaatgtttttt 184690  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 15991 - 16068
Alignment:
Q  169 gagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgattgaaatatt 247  Q
    |||||||||||||   ||||||||||| ||| |||||||||||||||||  || | |||||| ||||||||||| ||||    
T  15991 gagagtttacttttcttttttaaattacagactatataacatgtttttt-taaaaaaaattatgtgtgattgaagtatt 16068  T

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Target: scaffold0067 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 39395 - 39297
Alignment:
Q  167 gggagagtttactttatgtttttaaattatagattatataacatgttttttccaagataaattaagtgtgatt---gaaatattatatgattatttatca 263  Q
    ||||| |||||||||   |||||||||||  || ||| |||||||||||| | || |||||||||||||||||   ||| ||||||||||| ||||||||    
T  39395 gggagggtttacttttcttttttaaattacggactatgtaacatgttttt-ctaaaataaattaagtgtgattgaagaagtattatatgatcatttatca 39297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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