View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21603_high_8 (Length: 416)
Name: NF21603_high_8
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21603_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 6 - 400
Target Start/End: Original strand, 8287656 - 8288052
Alignment:
| Q |
6 |
aggagcacagatgtaaagaaagattccttagtcccttagtgagttgtaaccaatttgttcattctcttatatttatacatttcccatgtgaacacaagac |
105 |
Q |
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| T |
8287656 |
aggaccacacatgcaaagaaagattccttagtcctttagtgagctgtaaccaatttcttcattctcttatatttatacatttcccatgtgaacacaagat |
8287755 |
T |
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| Q |
106 |
tgcataactctgattcaagacatttaaggacttttgtttatttggctctcat--gcgtgtaatgacagtcgaagatcagccacaactatgtggatcaaca |
203 |
Q |
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| T |
8287756 |
tgcataactctgattcaagacatttagggacttttgtttatttggctctcatatgcgtgcaatgacagtcgaagatcagtcacaactatgtggatcgaca |
8287855 |
T |
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| Q |
204 |
tccttaggcatgggtggattcggtaaatcatcgagaaggtacgcttttctggagtctccgaaaaccatctttaatttgtctgtaaatttcttttagttta |
303 |
Q |
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| T |
8287856 |
tccttaggcatgggtggattcggtaaaacatcgaggaggtacgcttttctggagtttccggaaaccatctttaatttgtctgtaattttcttttagttta |
8287955 |
T |
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| Q |
304 |
tgttgttatctttgtttctaggaacacacaaagcaccatttctacatgttgttttttcatttcaggatccattacttgcgacagggcgaatgcaaat |
400 |
Q |
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| T |
8287956 |
tgttgttatctttgtttctaggaacacacaaagcaccatttctacatgttgttttttcatttcaggatccattacttgcgacagggcgaatgcaaat |
8288052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 8269518 - 8269584
Alignment:
| Q |
164 |
aatgacagtcgaagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
230 |
Q |
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| T |
8269518 |
aatgacggttgaagatcggccacaactatgtggaacaacatccttggggatgggcggattcggtaaa |
8269584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 37646590 - 37646665
Alignment:
| Q |
257 |
gtctccgaaaaccatctttaatttgtctgtaaatttcttttagtttatgttgttatctttgtttctaggaacacac |
332 |
Q |
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| T |
37646590 |
gtctccggaaaccatctttaatttgtctataattttcttttagtttatgttgttatctttgtttgcaggaacacac |
37646665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 37647478 - 37647528
Alignment:
| Q |
350 |
tgttgttttttcatttcaggatccattacttgcgacagggcgaatgcaaat |
400 |
Q |
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| T |
37647478 |
tgttgttttttcatttcaggttccattacttgcggcagggctaatgcaaat |
37647528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 1250767 - 1250825
Alignment:
| Q |
172 |
tcgaagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
230 |
Q |
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| T |
1250767 |
tcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaa |
1250825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 26585307 - 26585362
Alignment:
| Q |
175 |
aagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
230 |
Q |
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| T |
26585307 |
aagatcggccacaactatgtggagcaacaaccttgggaatgggtggattcggtaaa |
26585362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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