View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21603_low_1 (Length: 632)

Name: NF21603_low_1
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21603_low_1
NF21603_low_1
[»] chr4 (10 HSPs)
chr4 (66-407)||(33038833-33039174)
chr4 (471-623)||(33038617-33038769)
chr4 (276-338)||(30305855-30305917)
chr4 (556-598)||(33034984-33035026)
chr4 (276-342)||(10402497-10402563)
chr4 (307-345)||(23142698-23142736)
chr4 (276-338)||(36099135-36099197)
chr4 (19-52)||(33039160-33039193)
chr4 (249-338)||(45303936-45304024)
chr4 (258-338)||(47929283-47929363)
[»] chr3 (14 HSPs)
chr3 (276-338)||(15085636-15085698)
chr3 (276-338)||(36478140-36478202)
chr3 (249-342)||(25883936-25884029)
chr3 (251-342)||(3748550-3748641)
chr3 (258-338)||(46767381-46767461)
chr3 (276-338)||(27329884-27329946)
chr3 (276-342)||(40739159-40739225)
chr3 (276-338)||(41253701-41253763)
chr3 (276-338)||(41710639-41710701)
chr3 (276-338)||(51879151-51879213)
chr3 (276-342)||(53163650-53163716)
chr3 (276-345)||(32374895-32374964)
chr3 (246-290)||(30200849-30200893)
chr3 (246-342)||(55494712-55494807)
[»] chr2 (5 HSPs)
chr2 (229-342)||(10058877-10058991)
chr2 (276-345)||(14518340-14518409)
chr2 (307-342)||(32854619-32854654)
chr2 (276-342)||(1844873-1844939)
chr2 (254-342)||(13528660-13528748)
[»] chr5 (4 HSPs)
chr5 (254-342)||(5195093-5195181)
chr5 (246-321)||(27545120-27545195)
chr5 (276-338)||(3741010-3741072)
chr5 (307-343)||(18597495-18597531)
[»] chr8 (11 HSPs)
chr8 (276-342)||(5328515-5328581)
chr8 (254-332)||(14181300-14181378)
chr8 (276-338)||(36035131-36035193)
chr8 (276-338)||(37708747-37708809)
chr8 (246-290)||(8148421-8148465)
chr8 (276-338)||(31024350-31024412)
chr8 (276-342)||(34873142-34873208)
chr8 (276-338)||(44053392-44053454)
chr8 (229-342)||(13105100-13105213)
chr8 (276-345)||(34894425-34894494)
chr8 (246-342)||(2908040-2908135)
[»] chr6 (5 HSPs)
chr6 (276-337)||(32616440-32616501)
chr6 (229-287)||(331883-331941)
chr6 (276-342)||(33646891-33646957)
chr6 (258-342)||(2816928-2817012)
chr6 (246-290)||(15291684-15291728)
[»] chr1 (4 HSPs)
chr1 (261-342)||(49907321-49907402)
chr1 (258-342)||(28564293-28564377)
chr1 (276-342)||(17776896-17776962)
chr1 (272-342)||(49753465-49753535)
[»] scaffold0464 (1 HSPs)
scaffold0464 (294-342)||(5631-5679)
[»] chr7 (3 HSPs)
chr7 (246-286)||(46659393-46659433)
chr7 (249-284)||(18065881-18065916)
chr7 (276-345)||(1563684-1563753)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 66 - 407
Target Start/End: Complemental strand, 33039174 - 33038833
Alignment:
Q  66 aaacaattgactgttgtctatgtatgaaagacaaaaataaatggccttagcaaccgttgatatgggatatgagaagagcacttatttaatttgacatgaa 165  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33039174 aaacaaatgactgttgtctatgtatgaaagacaaaaataaatggccttagcaactgttgatatgggatatgagaagagcacttatttaatttgacatgaa 33039075  T
Q  166 caaaagtacgtgtaaaatatattggacataccacatattacttaattttgagcataaaagcatttaactcatgtggttgagacaatgtataatatatgca 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33039074 caaaagtacgtgtaaaatatattggacataccacatattacttaattttgagcataaaagcatttaactcaggtggttgagacaatgtataatatatgca 33038975  T
Q  266 aggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttgataattgtcgaaatttggtcatgt 365  Q
     |||||| | ||||||||||||||||| ||||||| ||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||    
T  33038974 gggattggggttcgaacctcggacatcccacttctttgtgcttaaaatgtgtgatctccagccactagactacttgataattgtcgaaatttagtcatgt 33038875  T
Q  366 tatatgttagtggcgacaactgcgattgtctcattattgatg 407  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  33038874 tatacgttagtggcgacaactgcgattctctcattattgatg 33038833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 471 - 623
Target Start/End: Complemental strand, 33038769 - 33038617
Alignment:
Q  471 aagatatgttgctgaaagtgaaagattgttggaatattttatcatataattaattaatacattccaatattattatgtgtgcatgtgttttacaagttct 570  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  33038769 aagatatgttgccgaaagtgaaagtttgttggaatattttatcatataattaattaatacattccaatactattatgtgtgcatatgttttacaagttct 33038670  T
Q  571 atgaaaaggcatgctttcctatatgctacactgaaaaggtattcacaggttct 623  Q
    |||||||||||| |||||||||||||||||||||||||| || ||| ||||||    
T  33038669 atgaaaaggcatactttcctatatgctacactgaaaaggcatgcacgggttct 33038617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 30305855 - 30305917
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| |||||| ||||||||||   | ||||||||||||||| ||||||||||||||||    
T  30305855 ttcgaaccccggacacctcacttctccacatttaaaatgtgtgagctccagccactaggctac 30305917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 598
Target Start/End: Original strand, 33034984 - 33035026
Alignment:
Q  556 tgttttacaagttctatgaaaaggcatgctttcctatatgcta 598  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  33034984 tgttttacaagttctatgaaaaggcttgttttcctatatgcta 33035026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 10402497 - 10402563
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||||||| |||||| ||||||||||   | ||||| ||||||||| | ||||||||||||||||||    
T  10402497 ttcgaaccccggacacctcacttctccacaattaaattgtgtgagctctagccactaggctacttga 10402563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 23142736 - 23142698
Alignment:
Q  307 ttaaaatgtgtgagcaccagccactaggctacttgataa 345  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  23142736 ttaaaatgtgtgagctccagccactaggctacctgataa 23142698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 36099197 - 36099135
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  36099197 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 36099135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 33039193 - 33039160
Alignment:
Q  19 tttaaatctaagtatcgtaaaacaattgactgtt 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  33039193 tttaaatctaagtatcgtaaaacaaatgactgtt 33039160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 45304024 - 45303936
Alignment:
Q  249 aatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||| ||||||||||||||| ||||  |||||||| |||||| | ||||||||   | | ||||||||||||  ||||||||||||||||    
T  45304024 aatgcataatatatgcaagggttgaagttcgaacc-cggacaccccacttctccacattaaaaatgtgtgagttccagccactaggctac 45303936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 338
Target Start/End: Original strand, 47929283 - 47929363
Alignment:
Q  258 tatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| || | ||| ||||||||||||| | | ||||||||   | ||||||||||||||| | ||||||||||||||    
T  47929283 tatatgcaggggtcgaggttcgaacctcggaaaccccacttctccacatttaaaatgtgtgagctctagccactaggctac 47929363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 15085698 - 15085636
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| |||||| ||||||||||  || ||||||||||||||| ||||||||||||||||    
T  15085698 ttcgaaccccggacacctcacttctccatatttaaaatgtgtgagctccagccactaggctac 15085636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 36478202 - 36478140
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    ||||||||||||||||||||||||||   | | ||||||||||||| ||||||||||||||||    
T  36478202 ttcgaacctcggacatctcacttctccacattaaaaatgtgtgagctccagccactaggctac 36478140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 25884029 - 25883936
Alignment:
Q  249 aatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||| |||||||||||| || | | | |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||||||    
T  25884029 aatgcataatatatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacttga 25883936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 251 - 342
Target Start/End: Complemental strand, 3748641 - 3748550
Alignment:
Q  251 tgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||||| |||||||| || ||| | |||||||| |||||||||||||||||   | || || ||||||||| | ||||||||||||||||||    
T  3748641 tgtatattatatgcaggggttggggttcgaaccccggacatctcacttctccacaatttaattgtgtgagctctagccactaggctacttga 3748550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 338
Target Start/End: Original strand, 46767381 - 46767461
Alignment:
Q  258 tatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| ||  |||| ||| |||| |||||||| ||||||||   | ||||||||||||||| ||||||||||||||||    
T  46767381 tatatgcaggggctgaggttcaaaccccggacatcccacttctccacatttaaaatgtgtgagctccagccactaggctac 46767461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 27329946 - 27329884
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  27329946 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 27329884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 40739225 - 40739159
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    ||||||| ||||||| ||||||||||  |  ||||||||||||||| | ||||||||| ||||||||    
T  40739225 ttcgaacttcggacacctcacttctccatgtttaaaatgtgtgagctctagccactagactacttga 40739159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 41253763 - 41253701
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| || ||| ||||||| ||  || ||||||||||||||| ||||||||||||||||    
T  41253763 ttcgaaccccgaacacctcacttttccatatttaaaatgtgtgagctccagccactaggctac 41253701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 41710639 - 41710701
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||| | |||||| ||||||||||   | ||||||||||||||| ||||||||||||||||    
T  41710639 ttcgaatcccggacacctcacttctccacatttaaaatgtgtgagctccagccactaggctac 41710701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 51879151 - 51879213
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  51879151 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 51879213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 53163650 - 53163716
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||||||| |||||| | |||||||| | | ||||| ||||||||| | ||||||||||||||||||    
T  53163650 ttcgaaccccggacaccccacttctccgcaattaaattgtgtgagctctagccactaggctacttga 53163716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 32374895 - 32374964
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttgataa 345  Q
    |||||||||||||||   |||||| ||||| ||||| ||||||||| | || |||||||||| |||||||    
T  32374895 ttcgaacctcggacactccacttccctgtaattaaattgtgtgagctctagtcactaggctatttgataa 32374964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 30200849 - 30200893
Alignment:
Q  246 gacaatgtataatatatgcaaggattgagattcgaacctcggaca 290  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||    
T  30200849 gacaatgcataatatatgcaaggtttgaggttcgaaccccggaca 30200893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 342
Target Start/End: Original strand, 55494712 - 55494807
Alignment:
Q  246 gacaatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    ||||||| |||||||||| ||||| || | ||||||||||  ||| | |||||||   || ||||||| ||||||| ||| ||||||||||||||||    
T  55494712 gacaatgcataatatatgtaaggactggggttcgaacctcatacacc-cacttcttcatatttaaaatatgtgagctccaaccactaggctacttga 55494807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 229 - 342
Target Start/End: Original strand, 10058877 - 10058991
Alignment:
Q  229 ttaactcatgtggttgagacaatgtataatatatgcaaggattgagattcgaacctcggacatctcacttct-ctgtacttaaaatgtgtgagcaccagc 327  Q
    ||||||||  |||| ||||||||| ||||||||||||| | | | | || ||||| |||||| ||||||| | || || ||||||||||| ||| |||||    
T  10058877 ttaactcaattggtagagacaatgcataatatatgcaaaggtcggggtttgaaccccggacaactcacttattctatatttaaaatgtgtaagctccagc 10058976  T
Q  328 cactaggctacttga 342  Q
    |||||||||||||||    
T  10058977 cactaggctacttga 10058991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 14518340 - 14518409
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttgataa 345  Q
    ||||||||||| |||   ||||||||  || ||||||||||||||| |||||||||||||||| ||||||    
T  14518340 ttcgaacctcgaacactccacttctccatatttaaaatgtgtgagctccagccactaggctacctgataa 14518409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 342
Target Start/End: Original strand, 32854619 - 32854654
Alignment:
Q  307 ttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    ||||||||||||||| ||||||||||||||||||||    
T  32854619 ttaaaatgtgtgagctccagccactaggctacttga 32854654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 1844873 - 1844939
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    ||||||||||||||| | ||||||||   | ||||| ||||||||| | ||||||||||||||||||    
T  1844873 ttcgaacctcggacaccccacttctccacaattaaattgtgtgagctctagccactaggctacttga 1844939  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 13528660 - 13528748
Alignment:
Q  254 ataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||||||||| | || |||||||||||||| | ||||||||||||||   || |||| |||||||||| | | |||| || ||||||||    
T  13528660 ataatatatgtaggggttgagattcgaaccccagacatctcacttctgcatatttaatatgtgtgagctctatccaccagactacttga 13528748  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 5195181 - 5195093
Alignment:
Q  254 ataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||||||||| | || ||||| |||||||||| |||| ||||||||||| || ||||||||||||||  ||| | ||||| ||||||||    
T  5195181 ataatatatgtaggggttgaggttcgaacctcagacacctcacttctctatatttaaaatgtgtgagttccaactactagactacttga 5195093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 27545195 - 27545120
Alignment:
Q  246 gacaatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagc 321  Q
    ||||||| ||||||||||||||| | ||| ||| || |||||||| |||||||||   || |||||||||||||||    
T  27545195 gacaatgcataatatatgcaagggtcgaggttcaaatctcggacacctcacttcttcatatttaaaatgtgtgagc 27545120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 3741010 - 3741072
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  3741010 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 3741072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 18597495 - 18597531
Alignment:
Q  307 ttaaaatgtgtgagcaccagccactaggctacttgat 343  Q
    ||||||||||||||| | |||||||||||||||||||    
T  18597495 ttaaaatgtgtgagctctagccactaggctacttgat 18597531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 5328581 - 5328515
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||||||| |||||| ||||||||||   | ||||||||||||||| | ||||||||||||||||||    
T  5328581 ttcgaaccccggacacctcacttctccacaattaaaatgtgtgagctctagccactaggctacttga 5328515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 14181378 - 14181300
Alignment:
Q  254 ataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccacta 332  Q
    ||||||||||||  | ||| |||||||||||| ||||||||||||||| | | ||||||||| ||||| ||| ||||||    
T  14181378 ataatatatgcagaggttgggattcgaacctccgacatctcacttctccgcatttaaaatgtatgagctccaaccacta 14181300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 36035193 - 36035131
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    ||||||||||||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  36035193 ttcgaacctcggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 36035131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 37708747 - 37708809
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| |||||||| ||||||||   | ||||||||||||||| ||||||||||||||||    
T  37708747 ttcgaaccccggacatcccacttctccacatttaaaatgtgtgagctccagccactaggctac 37708809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 8148465 - 8148421
Alignment:
Q  246 gacaatgtataatatatgcaaggattgagattcgaacctcggaca 290  Q
    |||||||||||||||||||||||  | ||||||||||||||||||    
T  8148465 gacaatgtataatatatgcaaggtctaagattcgaacctcggaca 8148421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 31024350 - 31024412
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  31024350 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 31024412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 34873142 - 34873208
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    ||||||||||||||| | ||||||||   | ||||||||||||||| ||||||||||| ||| ||||    
T  34873142 ttcgaacctcggacaccccacttctccacatttaaaatgtgtgagctccagccactagactatttga 34873208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 44053454 - 44053392
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctac 338  Q
    |||||||| |||||| | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  44053454 ttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 44053392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 342
Target Start/End: Original strand, 13105100 - 13105213
Alignment:
Q  229 ttaactcatgtggttgagacaatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagcc 328  Q
    ||||||||  |||| | ||||||| |||||||||||||||   | | |||||||||| |||| | ||||||||   | ||||||||||||||| |||| |    
T  13105100 ttaactcagttggtagggacaatgcataatatatgcaagggccggggttcgaacctcagacaccccacttctccacatttaaaatgtgtgagctccagtc 13105199  T
Q  329 actaggctacttga 342  Q
    | || |||||||||    
T  13105200 attatgctacttga 13105213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 34894425 - 34894494
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttgataa 345  Q
    |||||||| |||||| | ||||||||   | ||||| ||||||||| | |||||||||||||||||||||    
T  34894425 ttcgaaccccggacaccccacttctccacagttaaattgtgtgagctctagccactaggctacttgataa 34894494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 2908135 - 2908040
Alignment:
Q  246 gacaatgtataatatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    ||||||| |||||||||||| ||   | | ||||||||  ||||| | |||||||| | | ||||||||||||||| | ||||||||||||||||||    
T  2908135 gacaatgcataatatatgcaggggccggggttcgaaccctggacaccccacttctccgca-ttaaaatgtgtgagctctagccactaggctacttga 2908040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 32616440 - 32616501
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggcta 337  Q
    |||||| | |||||| | |||||||||| | ||||||||||||||| |||||||||||||||    
T  32616440 ttcgaatcccggacaccccacttctctgcatttaaaatgtgtgagctccagccactaggcta 32616501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 331941 - 331883
Alignment:
Q  229 ttaactcatgtggttgagacaatgtataatatatgcaaggattgagattcgaacctcgg 287  Q
    ||||||||  |||| ||||||||| ||||||||||||||| ||| ||||| ||||||||    
T  331941 ttaactcagttggtagagacaatgcataatatatgcaaggtttgggattcaaacctcgg 331883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 33646891 - 33646957
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    ||||||||||||||| | ||||||||   | ||||| ||||||||| | ||||||||||||||||||    
T  33646891 ttcgaacctcggacaccccacttctccacaattaaattgtgtgagctctagccactaggctacttga 33646957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 342
Target Start/End: Original strand, 2816928 - 2817012
Alignment:
Q  258 tatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||||||| ||  ||||||||||||  |||||| | ||||||||   | ||||| ||||||||| | ||||||||||||||||||    
T  2816928 tatatgcaggggctgagattcgaactccggacaccccacttctccacaattaaattgtgtgagctctagccactaggctacttga 2817012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 15291728 - 15291684
Alignment:
Q  246 gacaatgtataatatatgcaaggattgagattcgaacctcggaca 290  Q
    ||||||| ||||||||||||||| ||||| ||||||| |||||||    
T  15291728 gacaatgaataatatatgcaaggtttgaggttcgaacttcggaca 15291684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 49907321 - 49907402
Alignment:
Q  261 atgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||||||| | ||| |||||||| ||||||||  | |||||  || ||||||||||||| | ||||||||||||||||||||    
T  49907321 atgcaagggtcgaggttcgaaccccggacatcctatttctccatatttaaaatgtgtgaactccagccactaggctacttga 49907402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 342
Target Start/End: Complemental strand, 28564377 - 28564293
Alignment:
Q  258 tatatgcaaggattgagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||||||| || ||| | ||||||||||||||| | ||||||||   | ||||| ||||||||| | ||||||||||||||||||    
T  28564377 tatatgcaggggttggggttcgaacctcggacaccccacttctccacaattaaattgtgtgagctctagccactaggctacttga 28564293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 17776896 - 17776962
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||||||||||||||| |||||||||   | ||||| |||| |||| | ||||||||||||||||||    
T  17776896 ttcgaacctcggacatttcacttctccacaattaaattgtgcgagctctagccactaggctacttga 17776962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 49753535 - 49753465
Alignment:
Q  272 gagattcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    ||||||||||| ||||||||| ||||||| | || ||||| ||||||| | | |||||||||| |||||||    
T  49753535 gagattcgaacttcggacatcccacttctttataattaaattgtgtgaactctagccactaggttacttga 49753465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 5679 - 5631
Alignment:
Q  294 cacttctctgtacttaaaatgtgtgagcaccagccactaggctacttga 342  Q
    |||||||||||| ||||||||||||||| | | ||||||||||||||||    
T  5679 cacttctctgtatttaaaatgtgtgagctctaaccactaggctacttga 5631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 46659433 - 46659393
Alignment:
Q  246 gacaatgtataatatatgcaaggattgagattcgaacctcg 286  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  46659433 gacaatgtataatatatgcaaggtttgagattcaaacctcg 46659393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 284
Target Start/End: Original strand, 18065881 - 18065916
Alignment:
Q  249 aatgtataatatatgcaaggattgagattcgaacct 284  Q
    |||||||||||||||||||| |||||||||||||||    
T  18065881 aatgtataatatatgcaaggtttgagattcgaacct 18065916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 1563753 - 1563684
Alignment:
Q  276 ttcgaacctcggacatctcacttctctgtacttaaaatgtgtgagcaccagccactaggctacttgataa 345  Q
    |||||||| |||||| | |||||||||  | ||||| ||||||||| | | |||||||||||||||||||    
T  1563753 ttcgaaccccggacaccccacttctctacaattaaattgtgtgagctctaaccactaggctacttgataa 1563684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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