View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21603_low_10 (Length: 400)

Name: NF21603_low_10
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21603_low_10
NF21603_low_10
[»] chr2 (8 HSPs)
chr2 (1-125)||(38562030-38562152)
chr2 (310-395)||(38561760-38561845)
chr2 (193-242)||(38561913-38561962)
chr2 (193-241)||(16646967-16647015)
chr2 (333-390)||(38581309-38581366)
chr2 (205-241)||(30257800-30257836)
chr2 (205-241)||(36186630-36186666)
chr2 (194-241)||(17271269-17271316)
[»] chr8 (8 HSPs)
chr8 (193-241)||(22486603-22486651)
chr8 (193-241)||(26835602-26835650)
chr8 (193-241)||(43872580-43872628)
chr8 (198-241)||(22930394-22930437)
chr8 (201-239)||(13236257-13236295)
chr8 (201-237)||(9191271-9191307)
chr8 (193-241)||(13580366-13580414)
chr8 (193-241)||(21347512-21347560)
[»] chr3 (6 HSPs)
chr3 (193-241)||(15670991-15671039)
chr3 (201-242)||(33510113-33510154)
chr3 (193-241)||(11383666-11383714)
chr3 (193-241)||(11365120-11365168)
chr3 (193-241)||(27538793-27538841)
chr3 (193-229)||(33290783-33290819)
[»] chr4 (8 HSPs)
chr4 (196-241)||(55147681-55147726)
chr4 (193-241)||(23870120-23870168)
chr4 (201-241)||(36071573-36071613)
chr4 (193-241)||(7102215-7102263)
chr4 (201-241)||(7853368-7853408)
chr4 (193-241)||(29118545-29118593)
chr4 (201-241)||(6137757-6137797)
chr4 (207-239)||(41442475-41442507)
[»] chr7 (7 HSPs)
chr7 (193-241)||(21828234-21828281)
chr7 (193-237)||(3940659-3940703)
chr7 (193-241)||(30095747-30095795)
chr7 (198-241)||(3351153-3351196)
chr7 (193-236)||(35812693-35812736)
chr7 (205-241)||(21129347-21129383)
chr7 (205-241)||(40351787-40351823)
[»] chr6 (5 HSPs)
chr6 (193-241)||(33344894-33344942)
chr6 (193-241)||(35121955-35122003)
chr6 (201-241)||(34573202-34573242)
chr6 (193-241)||(31787888-31787936)
chr6 (205-241)||(34329843-34329879)
[»] chr5 (7 HSPs)
chr5 (195-241)||(32257695-32257741)
chr5 (201-241)||(502875-502915)
chr5 (193-241)||(20870703-20870751)
chr5 (201-241)||(3193538-3193578)
chr5 (201-241)||(12263662-12263702)
chr5 (209-241)||(18600260-18600292)
chr5 (193-229)||(18626743-18626779)
[»] chr1 (6 HSPs)
chr1 (203-241)||(49762468-49762506)
chr1 (193-229)||(15103055-15103091)
chr1 (201-241)||(33735766-33735806)
chr1 (193-241)||(22667203-22667251)
chr1 (193-229)||(23897910-23897946)
chr1 (209-241)||(38742467-38742499)
[»] scaffold0527 (2 HSPs)
scaffold0527 (205-241)||(1718-1754)
scaffold0527 (205-241)||(9781-9817)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 38562152 - 38562030
Alignment:
Q  1 agggcaccaaaaatgccaatcaactttagatttttggtgtcctaaaatttttggtactttacttttggttacttgtaacctaaacaacnnnnnnnnntga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||         |||    
T  38562152 agggcacccaaaatgccaatcaactttagatttttggtgtcctaaaatttttggtactctacttttggttatttgtaacctaaacaac--aaaaaaatga 38562055  T
Q  101 acatatatgaatgtcatattgtgcc 125  Q
    |||||||||||||||||||||||||    
T  38562054 acatatatgaatgtcatattgtgcc 38562030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 38561845 - 38561760
Alignment:
Q  310 ttcggtgctcagggccacccctgactctacatgtggtatagtacactctaagtgtaaaatgttttatatcaacaactgtcctagct 395  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  38561845 ttcggtgctcagggccacccctgactctacctgtggtataatacactctaagtgtaaaatgttttatatcaacaacagtcctagct 38561760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 38561962 - 38561913
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaatg 242  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  38561962 tgcacaatattcatttataatgaaagttctctaaaaaaatattttcaatg 38561913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 16646967 - 16647015
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  16646967 tgcacaagattcatttataattaaaattctctaaaaagatattttcaat 16647015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 38581366 - 38581309
Alignment:
Q  333 actctacatgtggtatagtacactctaagtgtaaaatgttttatatcaacaactgtcc 390  Q
    ||||||| ||||||||||||||||||  ||||||||||||||| ||| ||||| ||||    
T  38581366 actctacttgtggtatagtacactctttgtgtaaaatgttttacatctacaacagtcc 38581309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 30257800 - 30257836
Alignment:
Q  205 atttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||||||||||||||||||||| |||||||||||    
T  30257800 atttataatcaaagttctctaaaaatatattttcaat 30257836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 36186630 - 36186666
Alignment:
Q  205 atttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||||||||||||||||||||| |||||||||||    
T  36186630 atttataatcaaagttctctaaaaatatattttcaat 36186666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 17271269 - 17271316
Alignment:
Q  194 gcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||||| ||||||||||||||||||||  ||||||| |||||||||||    
T  17271269 gcacaagattcatttataatcaaagtttgctaaaaatatattttcaat 17271316  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 22486603 - 22486651
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  22486603 tgcacaagattcatttataatcaaagttctctaaaatgatattttcaat 22486651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 26835602 - 26835650
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  26835602 tgcacaagattcatttataatcaaagttctctaaaaatatattttcaat 26835650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 43872628 - 43872580
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||| |||||||||||||||||||||| |||||| |||||| ||||    
T  43872628 tgcacaagattcatttataatcaaagttctttaaaaatatatttacaat 43872580  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 22930437 - 22930394
Alignment:
Q  198 aatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||||||||||||||||||| |||||||| || ||||||||    
T  22930437 aatattcatttataatcaaagttatctaaaaatattttttcaat 22930394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 13236295 - 13236257
Alignment:
Q  201 attcatttataatcaaagttctctaaaaagatattttca 239  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  13236295 attcgtttataatcaaagttctctaaaaatatattttca 13236257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 9191307 - 9191271
Alignment:
Q  201 attcatttataatcaaagttctctaaaaagatatttt 237  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  9191307 attcatttataatcatagttctctaaaaatatatttt 9191271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 13580366 - 13580414
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| ||||||||||||||| ||||||| | |||||| |||||||||||    
T  13580366 tgcaaaatattcatttataaccaaagttatttaaaaatatattttcaat 13580414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 21347512 - 21347560
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||| ||||||||||||||||| || | |||||| |||||||||||    
T  21347512 tgcacaagattcatttataatcaaatttatttaaaaatatattttcaat 21347560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 15671039 - 15670991
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  15671039 tgcacaagattcatttataatcaaagttttctaaaaagatattttcaat 15670991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 33510113 - 33510154
Alignment:
Q  201 attcatttataatcaaagttctctaaaaagatattttcaatg 242  Q
    ||||||||||||| ||||||||||||||| ||||||||||||    
T  33510113 attcatttataattaaagttctctaaaaatatattttcaatg 33510154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 11383714 - 11383666
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| ||||||||||||||||||||||| |||||||| || ||||||||    
T  11383714 tgcaaaatattcatttataatcaaagttatctaaaaatattttttcaat 11383666  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 11365168 - 11365120
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| ||||||||||||||||||||||| | |||||| || ||||||||    
T  11365168 tgcaaaatattcatttataatcaaagttatttaaaaatatcttttcaat 11365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 27538793 - 27538841
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| ||||||||||| ||||||||||| | |||||| |||||||||||    
T  27538793 tgcaaaatattcatttctaatcaaagttatttaaaaatatattttcaat 27538841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 33290819 - 33290783
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaa 229  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  33290819 tgcacaagattcatttatgatcaaagttctctaaaaa 33290783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 55147681 - 55147726
Alignment:
Q  196 acaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||    
T  55147681 acaagattcatttataatcaaagttctctaaaaagacattttcaat 55147726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 23870168 - 23870120
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  23870168 tgcaaaatattcatttataatcaaagttatctaaaaatatattttcaat 23870120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 36071573 - 36071613
Alignment:
Q  201 attcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  36071573 attcatttataatcaaagttctctaaaaatatattttcaat 36071613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 7102263 - 7102215
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||| ||||||||||||| |||||||||||||||  ||||||||||    
T  7102263 tgcacaagattcatttataataaaagttctctaaaaatgtattttcaat 7102215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 7853408 - 7853368
Alignment:
Q  201 attcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  7853408 attcatttataatcaaagttttctaaaaatatattttcaat 7853368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 29118593 - 29118545
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| |||||||||| |||||||||||||| |||||| |||||||||||    
T  29118593 tgcaaaatattcattcataatcaaagttctttaaaaacatattttcaat 29118545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 6137797 - 6137757
Alignment:
Q  201 attcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||||||| |||||||||||||||||| | |||||||||||    
T  6137797 attcatttctaatcaaagttctctaaatatatattttcaat 6137757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 41442475 - 41442507
Alignment:
Q  207 ttataatcaaagttctctaaaaagatattttca 239  Q
    ||||||||||| |||||||||||||||||||||    
T  41442475 ttataatcaaacttctctaaaaagatattttca 41442507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 21828281 - 21828234
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  21828281 tgcacaagattcatttataatcaaagttctctaaaaag-tattttcaat 21828234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 3940659 - 3940703
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatatttt 237  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||||    
T  3940659 tgcacaagatttatttataatcaaagttctttaaaaagatatttt 3940703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 30095747 - 30095795
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| ||||||||||||||||||||||| |||||||| || ||||||||    
T  30095747 tgcaaaatattcatttataatcaaagttatctaaaaatattttttcaat 30095795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 3351196 - 3351153
Alignment:
Q  198 aatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||    
T  3351196 aatattcatttataatcaaagttatctaaaaatataatttcaat 3351153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 35812736 - 35812693
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattt 236  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||    
T  35812736 tgcaaaatattcatttataatcaaagttatctaaaaatatattt 35812693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 21129347 - 21129383
Alignment:
Q  205 atttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  21129347 atttataatcaaaattctctaaaaaaatattttcaat 21129383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 40351787 - 40351823
Alignment:
Q  205 atttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||||||||||||||||| |||||| |||||||||||    
T  40351787 atttataatcaaagttctttaaaaatatattttcaat 40351823  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 33344942 - 33344894
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  33344942 tgcaaaatattcatttataatcaaagttatctaaaaatatattttcaat 33344894  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 35121955 - 35122003
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  35121955 tgcaaaatattcatttataatcaaagttatctaaaaatatattttcaat 35122003  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 34573202 - 34573242
Alignment:
Q  201 attcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  34573202 attcatttataatcaaagttctttaaaaatatattttcaat 34573242  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 31787936 - 31787888
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| |||||||||||||||| |||||| |||| ||| |||||||||||    
T  31787936 tgcaaaatattcatttataattaaagttatctacaaatatattttcaat 31787888  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 34329843 - 34329879
Alignment:
Q  205 atttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||||||| |||||||||||||||| |||||||||||    
T  34329843 atttataagcaaagttctctaaaaatatattttcaat 34329879  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 32257695 - 32257741
Alignment:
Q  195 cacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||| ||||||||||||||||||||||||||||  |||||||||||    
T  32257695 cacaaaattcatttataatcaaagttctctaaaagtatattttcaat 32257741  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 502915 - 502875
Alignment:
Q  201 attcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  502915 attcattcataatcaaagttctctaaaaatatattttcaat 502875  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 20870751 - 20870703
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| ||||||||||||||||||||||| |||||||| ||||| |||||    
T  20870751 tgcagaatattcatttataatcaaagttatctaaaaatatattatcaat 20870703  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 3193538 - 3193578
Alignment:
Q  201 attcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||| |||||||||||||| |||||| |||||||||||    
T  3193538 attcattcataatcaaagttctttaaaaacatattttcaat 3193578  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 12263662 - 12263702
Alignment:
Q  201 attcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||||| ||||||||||||||| |||||| |||||||||||    
T  12263662 attcatctataatcaaagttctttaaaaatatattttcaat 12263702  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 18600292 - 18600260
Alignment:
Q  209 ataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||||||||||||||||| |||||||||||    
T  18600292 ataatcaaagttctctaaaaacatattttcaat 18600260  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 18626779 - 18626743
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaa 229  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  18626779 tgcacaagattcatttataatcaaagttctcaaaaaa 18626743  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 49762468 - 49762506
Alignment:
Q  203 tcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  49762468 tcatttataatcaaagttctctaaaaatatattttcaat 49762506  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 15103055 - 15103091
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaa 229  Q
    ||||||| |||||||||||||||||||||||||||||    
T  15103055 tgcacaagattcatttataatcaaagttctctaaaaa 15103091  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 33735766 - 33735806
Alignment:
Q  201 attcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  33735766 attcatttataatcaaagttgtctaaaaatatattttcaat 33735806  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 22667203 - 22667251
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaagatattttcaat 241  Q
    |||| ||||||||||||||||||||||| || ||||| | |||||||||    
T  22667203 tgcaaaatattcatttataatcaaagttatccaaaaataaattttcaat 22667251  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 23897910 - 23897946
Alignment:
Q  193 tgcacaatattcatttataatcaaagttctctaaaaa 229  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  23897910 tgcaaaatattcatttataatcaaagttatctaaaaa 23897946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 38742499 - 38742467
Alignment:
Q  209 ataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||||||||||||||||| |||||||||||    
T  38742499 ataatcaaagttctctaaaaatatattttcaat 38742467  T

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Target: scaffold0527 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 1754 - 1718
Alignment:
Q  205 atttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1754 atttataatcaaagttctctaaaaatatattttcaat 1718  T

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Target: scaffold0527; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 9817 - 9781
Alignment:
Q  205 atttataatcaaagttctctaaaaagatattttcaat 241  Q
    ||||||||||||||||||||||||| |||||||||||    
T  9817 atttataatcaaagttctctaaaaatatattttcaat 9781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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