View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21603_low_19 (Length: 263)
Name: NF21603_low_19
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21603_low_19 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 28238603 - 28238357
Alignment:
| Q |
16 |
cagaaacggtggaaggaatgaatggtaaaaatcatttagaacattccttcaccatgcttttctaaacatgaacatagtaaaatgaccgaaatgcacatga |
115 |
Q |
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| T |
28238603 |
cagaaacggtggaaggaatgaatggtaaaaatcatttagaacattccttcaccatgcttttctaaacatgaacatagtaaaatgaccgaaatgcacatga |
28238504 |
T |
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| Q |
116 |
cattgttcctgcatggtttttcttgtaccgaaatcattttcgataactctggatggcacaagtttcctttgtattgggagagggaacctgcctatctcaa |
215 |
Q |
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| T |
28238503 |
cattgttcctgcatggtttttcttgtaccgaaatcattttcgataactctggatggcacaagtttcctttctattgggagagggaacctgcctatctcaa |
28238404 |
T |
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| Q |
216 |
agacttcgattatgataagtttgaccgaatccgagagatatgcagtaa |
263 |
Q |
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| T |
28238403 |
aggctttgattaggataag-ttgaccgaatccgagagatatgcagtaa |
28238357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 28219649 - 28219526
Alignment:
| Q |
16 |
cagaaacggtggaaggaatgaatggtaaaaatcatttagaacattccttcaccatgcttttctaaacatgaacatagtaaaatgaccgaaatgcacatga |
115 |
Q |
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| T |
28219649 |
cagaaacggtggaaggaatgaatggtaaaaatcatttagaacattccttcaccatgcttttctaaacatgaacatagtaaaatgaccgaaatgcacatga |
28219550 |
T |
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| Q |
116 |
cattgttcctgcatggtttttctt |
139 |
Q |
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| T |
28219549 |
cattgttcctgcatggtttttctt |
28219526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 135 - 263
Target Start/End: Complemental strand, 28217625 - 28217498
Alignment:
| Q |
135 |
ttcttgtaccgaaatcattttcgataactctggatggcacaagtttcctttgtattgggagagggaacctgcctatctcaaagacttcgattatgataag |
234 |
Q |
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| T |
28217625 |
ttcttgtactgaaatcattttcgataactctggatggcacaagtttcctttgtattgggagagggaacctgcctatctcaaagactttgattatgataag |
28217526 |
T |
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| Q |
235 |
tttgaccgaatccgagagatatgcagtaa |
263 |
Q |
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| T |
28217525 |
-ttgaccgaatctgagagatatgcagtaa |
28217498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 28233481 - 28233430
Alignment:
| Q |
182 |
ctttgtattgggagagggaacctgcctatctcaaagacttcgattatgataa |
233 |
Q |
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|||||| |||||||||||| ||||||||| |||||| |||||||||||||| |
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| T |
28233481 |
ctttgtgttgggagagggagcctgcctatatcaaaggattcgattatgataa |
28233430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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