View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21603_low_3 (Length: 500)
Name: NF21603_low_3
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21603_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 36129215 - 36128736
Alignment:
| Q |
1 |
tcatcactacctcttcacttacctttccctctttcaacaccaaacaataccttccctccttttgatccttataatcaacaaaaccatccttctcaacatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36129215 |
tcatcactacctcttcacttacctttccctctttcaacaccaaacaataccttccctccttttgatccttataatcaacaaaaccatccttctcaacatc |
36129116 |
T |
|
| Q |
101 |
accaattgccactccaagttcaacctaatattctcttgcaccctttacaccctcacaaagatgatgaagataaggaacaaaactctacaccttcaatgaa |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36129115 |
accaattgccactccaagttcaacctaat---ctcttgcaccctttacaccctcacaaagatgatgaagataaggaacaaaactctacaccttcaatgaa |
36129019 |
T |
|
| Q |
201 |
caacttccaaattgacagagatcaaagacaaatacttcctcaactcattgatccttggactaatgatgaagttcttgcacttttgaagatcagatccagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36129018 |
caacttccaaattgacagagatcaaagacaaatacttcctcaactcattgatccttggactaatgatgaagttcttgcacttttgaagatcagatccagc |
36128919 |
T |
|
| Q |
301 |
atggagagttggttcccagatttcacttgggaacatgtctcaaggtatacatacaaatatatcattgtaattctaacatctccttcacttcatccattta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36128918 |
atggagagttggttcccagatttcacttgggaacatgtctcaaggtatacatacaaatatatcattgtaattctaacatctccttcacttcatccattta |
36128819 |
T |
|
| Q |
401 |
atcaagtcattaacaatcataccaataattaataaataaattcatatatgagctagatatttataaatcgtaactaatgtatattct |
487 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36128818 |
atcaagtcattaacaatcataccaataattaat----aaattcatatatgagctagatatttataaatcgtaactaatgtatattct |
36128736 |
T |
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