View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21603_low_6 (Length: 451)
Name: NF21603_low_6
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21603_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 52182885 - 52182571
Alignment:
| Q |
1 |
gtagaagcagcagaaggatgatgaatggaaatgtgtttgagttagtggtaagagccatgagttttgtgaatgttcttttgtttgatagtattttgaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52182885 |
gtagaagcagcagaaggatgatgaatggaaatgtgtttgagttagtggtaagagccatgagttttgtgaatgttcttttgtttgatagtactttgaagtt |
52182786 |
T |
|
| Q |
101 |
agatttggaagagacttgagagggtaaacagagttgaagttgcggtgtgtccactgactgcattgaagaatttatagttacaatctctgagcgaagtgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52182785 |
agatttggaagagacttgagagggtaa-cagagttgaagttgtggtgtgtccactgactgcattgaagaatttatagttacaatctttgagcgaagtgtt |
52182687 |
T |
|
| Q |
201 |
cgattttgggtcgaaattaattaaagtgaagtagttgggtccctatattttaggagcaggacgtgtgccaaaacgtttcaaagctaccaatctttgaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52182686 |
cgattttgggtcgaaattaattaaagtgaagtagttgggtccctatattttaggagcaggacgtgtgccaaaacgtttcaaagctaccaatctttgaaaa |
52182587 |
T |
|
| Q |
301 |
gcctcaactagatgaa |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
52182586 |
gcctcaactagatgaa |
52182571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 327 - 438
Target Start/End: Complemental strand, 52182526 - 52182414
Alignment:
| Q |
327 |
acattgtcagtgtacgtgtatgtagtaaaaaataa-gtttctttcttnnnnnnntaaaataacgaaagaaatccttaattaatttaactgccacactcca |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52182526 |
acattgtcagtgtacgtgtatgtagtaaaaaataaagtttctttcttaaaaaaataaaataacgaaagaaatccttaattaatttaactgccacactcca |
52182427 |
T |
|
| Q |
426 |
cgttctctgtgct |
438 |
Q |
| |
|
||||||||||||| |
|
|
| T |
52182426 |
cgttctctgtgct |
52182414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University