View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21603_low_7 (Length: 445)

Name: NF21603_low_7
Description: NF21603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21603_low_7
NF21603_low_7
[»] chr8 (9 HSPs)
chr8 (1-282)||(6633599-6633877)
chr8 (1-404)||(6807489-6807892)
chr8 (141-426)||(6835403-6835691)
chr8 (169-425)||(6632246-6632505)
chr8 (276-400)||(6840761-6840888)
chr8 (318-425)||(6621201-6621310)
chr8 (326-425)||(6811282-6811377)
chr8 (318-425)||(6595387-6595496)
chr8 (1-73)||(6835759-6835831)
[»] scaffold0514 (1 HSPs)
scaffold0514 (318-425)||(914-1023)
[»] scaffold0470 (1 HSPs)
scaffold0470 (318-379)||(10667-10728)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 6633877 - 6633599
Alignment:
Q  1 gtgttctaaaaaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagctccgaaagggcattgtcagcacataata 100  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6633877 gtgttccaaagaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagctccgaaagggcattgtcagcacataata 6633778  T
Q  101 tatttcccttttgagctttgttgttgttctcttcaacagacctaacaccaccgggtggacttattgcgatttgaaatgttactgttgctatgaatactgc 200  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  6633777 tatttcccttttgagctttgt---tgttctcttcaacagacctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaatactgc 6633681  T
Q  201 tactacactcatatttcctctcatctgtttcaaccattcatccnnnnnnnngtatgacaaccaattcaatgctagttctaaa 282  Q
    ||||||||||||||||||||||||||||| |||||||||||||        |||||||||||||||||||||||||||||||    
T  6633680 tactacactcatatttcctctcatctgttccaaccattcatccttgtttttgtatgacaaccaattcaatgctagttctaaa 6633599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 6807892 - 6807489
Alignment:
Q  1 gtgttctaaaaaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagctccgaaagggcattgtcagcacataata 100  Q
    |||||| || ||||||||||| ||||||   |||||||||||| ||||||||||||||| ||||||||||||||| || ||| || || |||||||||||    
T  6807892 gtgttccaataaaggaagtcagaatagtgttcagggtatacaacggccaaagcagcttcacccggacatagctccaaacgggtatcgttagcacataata 6807793  T
Q  101 tatttcccttttgagctttgttgttgttctcttcaacagacctaacaccaccgggtggacttattgcgatttgaaatgttactgttgctatgaatactgc 200  Q
    ||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  6807792 tatttcctttttgagctttgttgtt---ctcttcaacagacctaacaccaccgggtggacttattgccatttaaaatgttaatgttgctatgaatactgc 6807696  T
Q  201 tactacactcatatttcctctcatctgtttcaaccattcatccnnnnnnnngtatgacaaccaattcaatgctagttctaaaacctttctccaaccttt- 299  Q
    ||||||||||||||||||||||||||||| |||||||||||||        |||||||||||||  || ||||| ||  |||||| |||||||||||||     
T  6807695 tactacactcatatttcctctcatctgttccaaccattcatccttgtttttgtatgacaaccaacgcactgctaatttgaaaacccttctccaacctttc 6807596  T
Q  300 tct--ttcctcacttgttggggtttttgttgaacgaccatgattatccacttgattgttcattgtctttccttcaaaacaacaatgaaatataaaagaat 397  Q
    |||  || || | | ||| |||||| |||||||| |||||||||||||||||||||||||||||| | || |||||||||||  ||||||||||||||||    
T  6807595 tcttgtttcttattggttagggtttctgttgaaccaccatgattatccacttgattgttcattgtttgtcgttcaaaacaaccctgaaatataaaagaat 6807496  T
Q  398 tgtcata 404  Q
    |||||||    
T  6807495 tgtcata 6807489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 141 - 426
Target Start/End: Complemental strand, 6835691 - 6835403
Alignment:
Q  141 cctaacaccaccgggtggacttattgcgatttgaaatgttactgttgctatgaatactgctactacactcatatttcctctcatctgtttcaaccattca 240  Q
    |||||| |||||||||||| |||| || |||||||| |||| |||||||||||||| |||||||| ||||||||| || ||||| || | ||||||| ||    
T  6835691 cctaacgccaccgggtggatttatagccatttgaaacgttattgttgctatgaatattgctactatactcatattccccctcatttgatccaaccatgca 6835592  T
Q  241 tccnnnnnnnngtatgacaaccaattcaatgctagttctaaaacctttctccaaccttttctt---tcctcacttgttggggtttttgttgaacgaccat 337  Q
    | |        ||||||||||||||||| ||||||||||||||||||||||||||||||  ||   |||||||| | |||||||||||||||||||||||    
T  6835591 ttcttgttttggtatgacaaccaattcactgctagttctaaaacctttctccaacctttctttggttcctcactcgatggggtttttgttgaacgaccat 6835492  T
Q  338 gattatccacttgattgttcattgtctttccttcaaaacaacaatgaaatataaaagaattgtcatatcttttttaacgtaccatataa 426  Q
     |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  6835491 cattatccacttgattgtttattgtctttccttcaaaacaaaaatgaaatataaaatgattgtcatatcttttttaacgtaccatataa 6835403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 169 - 425
Target Start/End: Complemental strand, 6632505 - 6632246
Alignment:
Q  169 atttgaaatgttactgttgctatgaatactgctactacactcatatttcctctcatctgtttcaaccattcatccnnnnnnnngtatgacaaccaattca 268  Q
    ||||||||||||| |||||||||||||| |||||||||||| | ||| |||||||||| || |||||| |||| |        |||||||||||||  ||    
T  6632505 atttgaaatgttattgttgctatgaatattgctactacactaaaattccctctcatcttttccaaccagtcattcttgtttttgtatgacaaccaacgca 6632406  T
Q  269 atgctagttctaaaacctttctccaaccttt-tctt--tcctcacttgttggggtttttgttgaacgaccatgattatccacttgattgttcattgtctt 365  Q
     ||||| ||  |||||| ||||||||||||| ||||  | || | | ||| |||||| |||||||| ||||||||||||||||||||||||||||||||     
T  6632405 ctgctaatttgaaaacccttctccaacctttctcttgtttcttattggttagggtttctgttgaaccaccatgattatccacttgattgttcattgtctg 6632306  T
Q  366 tccttcaaaacaacaatgaaatataaaagaattgtcatatcttttttaacgtaccatata 425  Q
     | ||||||||||  |||||||||  ||||||||||||| ||| ||||| | ||||||||    
T  6632305 ccattcaaaacaatcatgaaatatgtaagaattgtcataacttgtttaatgcaccatata 6632246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 400
Target Start/End: Complemental strand, 6840888 - 6840761
Alignment:
Q  276 ttctaaaacctttctccaaccttttctt---tcctcacttgttggggtttttgttgaacgaccatgattatccacttgattgttcattgtctttccttca 372  Q
    |||||| |||||||||||||||||  ||   ||| || | ||||||||||  ||||||| ||||||||| ||||||| | |||||||||||| || ||||    
T  6840888 ttctaatacctttctccaacctttctttggttccccaatagttggggtttcggttgaaccaccatgattttccacttcagtgttcattgtctctctttca 6840789  T
Q  373 aaacaacaatgaaatataaaagaattgt 400  Q
    ||||||| ||||||||| ||||||||||    
T  6840788 aaacaaccatgaaatatgaaagaattgt 6840761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 425
Target Start/End: Complemental strand, 6621310 - 6621201
Alignment:
Q  318 ggtttttgttgaacgaccatgattatccacttgattgttcattgtctttccttcaaaacaacaatgaaatataaaaga--attgtcatatcttttttaac 415  Q
    ||||| ||||||||  |||||||| ||||||| |||||||||||| | |||||||||||||| || |||||| |||||  ||||||||| ||| |||||     
T  6621310 ggtttctgttgaacctccatgattttccacttcattgttcattgtttctccttcaaaacaaccataaaatattaaagatcattgtcataacttgtttaat 6621211  T
Q  416 gtaccatata 425  Q
    ||||||||||    
T  6621210 gtaccatata 6621201  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 6811377 - 6811282
Alignment:
Q  326 ttgaacgaccatgattatccacttgattgttcattgtctttccttcaaaacaacaatgaaatataaaagaattgtcatatcttttttaacgtaccatata 425  Q
    |||||| ||||||||| ||| ||| | |||||||||||| |||||||||||||| ||    ||| |||||||||||||| ||| ||||| ||||||||||    
T  6811377 ttgaaccaccatgattttcctcttcaatgttcattgtctctccttcaaaacaaccat----tatgaaagaattgtcataacttgtttaatgtaccatata 6811282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 425
Target Start/End: Complemental strand, 6595496 - 6595387
Alignment:
Q  318 ggtttttgttgaacgaccatgattatccacttgattgttcattgtctttccttcaaaacaacaatgaaatataaaaga--attgtcatatcttttttaac 415  Q
    ||||| ||||||||  |||| |||  |||||| ||||||||| || | |||||||||||||| ||||||||| |||||  | ||||||| ||| |||||     
T  6595496 ggtttctgttgaacctccataatttgccacttcattgttcatcgtttctccttcaaaacaaccatgaaatattaaagattagtgtcataacttgtttaat 6595397  T
Q  416 gtaccatata 425  Q
    ||||||||||    
T  6595396 gtaccatata 6595387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6835831 - 6835759
Alignment:
Q  1 gtgttctaaaaaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagct 73  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||| ||  |||| |  |||||||||||||    
T  6835831 gtgttccaaaaaaggaagtcagcatagtcatcagggtatacaatggctaagacagcattacccggacatagct 6835759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 425
Target Start/End: Original strand, 914 - 1023
Alignment:
Q  318 ggtttttgttgaacgaccatgattatccacttgattgttcattgtctttccttcaaaacaacaatgaaatataaaaga--attgtcatatcttttttaac 415  Q
    ||||| ||||||||  |||||||| ||||||| |||||||||||| | |||||||||||||| || |||||| |||||  ||||| ||| ||| |||||     
T  914 ggtttctgttgaacctccatgattttccacttcattgttcattgtttctccttcaaaacaaccataaaatattaaagatcattgttataacttgtttaat 1013  T
Q  416 gtaccatata 425  Q
    ||||||||||    
T  1014 gtaccatata 1023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 10728 - 10667
Alignment:
Q  318 ggtttttgttgaacgaccatgattatccacttgattgttcattgtctttccttcaaaacaac 379  Q
    ||||| ||||||||  |||||||| ||||||| |||||||||||| | ||||||||||||||    
T  10728 ggtttctgttgaacctccatgattttccacttcattgttcattgtttctccttcaaaacaac 10667  T

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