View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21604_high_1 (Length: 503)
Name: NF21604_high_1
Description: NF21604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21604_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 488
Target Start/End: Complemental strand, 5688818 - 5688374
Alignment:
| Q |
17 |
atgagaatatgtgtagagctctcaaaatgggttatctaaccttaaacagatcggccttaacaacctttatcgcgttaggccaaaaagttctttcaagtat |
116 |
Q |
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| T |
5688818 |
atgagattatgtgtagagctctcaaaatgggttatctaaccttaaagagatcggccctaacaacctttatcgctttaggccaaaaagttctttcaagtac |
5688719 |
T |
|
| Q |
117 |
gagctataaaaatactatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttannnnnnngaaaatattataaagactctca |
216 |
Q |
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| T |
5688718 |
gagctataaaaatactatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttatttttttgaaaatattataaagactctca |
5688619 |
T |
|
| Q |
217 |
caaaatttcttataaacattattttgnnnnnnnntctgagactatattttatgattcaaactctacattttattagatttggcgggctagcccattttta |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5688618 |
caaaatttcttataaacattattttgaaaaaaaatctgagactatattttatggttcaaactctacattttattagatttggcgggctagcccattttta |
5688519 |
T |
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| Q |
317 |
caactctaaatatgtatgtggaacctgtaagtgaagttggtagtgatggaggtgaagttgtgcgtcttagaccagccttttgtttactcataatgttgta |
416 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5688518 |
ca---------------gtggaacctgtaagtgaagttggtagtgatggaggtgaagtt------------ccagccttttgtttactcataatgttgta |
5688446 |
T |
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| Q |
417 |
ctggcgggagctgcaaaccatccccagccataagaaatgattgtcattagttagaattatcgagaattatgt |
488 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
5688445 |
ctggcgggagctgcaaaccatcccccgccataagaaatgattgtcattagttcgaattatcgaggattatgt |
5688374 |
T |
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