View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21604_high_2 (Length: 262)
Name: NF21604_high_2
Description: NF21604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21604_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 7663672 - 7663921
Alignment:
| Q |
1 |
ccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaagaatgggttgatccattagagttcaaacctgaaaggttc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7663672 |
ccacattccaaagggttcaactcttttggttaatgtatgggccatcgctcgagacccaaaagaatgggttgatccattagagttcaaacctgaaaggttc |
7663771 |
T |
|
| Q |
101 |
ttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtagaatatgtcctgggatgagtctag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7663772 |
ttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtagaatatgtcctgggatgagtctag |
7663871 |
T |
|
| Q |
201 |
ggcttcgtatggtccaacttctaacagctacactggcccattcatttgat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7663872 |
ggcttcgtatggtccaacttctaacagctacactggcccattcatttgat |
7663921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 7620220 - 7619971
Alignment:
| Q |
1 |
ccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaagaatgggttgatccattagagttcaaacctgaaaggttc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7620220 |
ccacattccaaagggttcaactcttttggtcaatgtatgggccatcgctcgagacccaaaagaatgggttgatccattagagttcaaacctgaaaggttc |
7620121 |
T |
|
| Q |
101 |
ttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtagaatatgtcctgggatgagtctag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7620120 |
ttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtagaatatgtcctgggatgagtctag |
7620021 |
T |
|
| Q |
201 |
ggcttcgtatggtccaacttctaacagctacactggcccattcatttgat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7620020 |
ggcttcgtatggtccaacttctaacagctacactagcccattcatttgat |
7619971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 7669369 - 7669618
Alignment:
| Q |
1 |
ccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaagaatgggttgatccattagagttcaaacctgaaaggttc |
100 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7669369 |
ccacgttccaaagagttcaactcttttggttaatgtatgggccattgctcgtgatccaaaagaatgggttgatccattaggattcaaacctgaaaggttc |
7669468 |
T |
|
| Q |
101 |
ttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtagaatatgtcctgggatgagtctag |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
7669469 |
ttattaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtagaatatgtgttgggatgagtcttg |
7669568 |
T |
|
| Q |
201 |
ggcttcgtatggtccaacttctaacagctacactggcccattcatttgat |
250 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
7669569 |
ggcttcgtatggtacagcttctaacagctacactagcccattcatttgat |
7669618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7682911 - 7683131
Alignment:
| Q |
1 |
ccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaagaatgggttgatccattagagttcaaacctgaaaggttc |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||||||||||||| ||||| || | | || |||||||||||||||| |||||||||| || |||||| |
|
|
| T |
7682911 |
ccacattccaaaggattcaactcttttggtaaatgtatgggccatagctcgtgaccaagaaatatgggttgatccattaaagttcaaacccgagaggttc |
7683010 |
T |
|
| Q |
101 |
ttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtagaatatgtcctgggatgagtctag |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||| ||||| |
|
|
| T |
7683011 |
ttaccaggtggtgagaattgtgatgttgatgtgaagggaaatgattttgaggttataccttttggcgctggacgtagaatatgtgctggattgaatctag |
7683110 |
T |
|
| Q |
201 |
ggcttcgtatggtccaacttc |
221 |
Q |
| |
|
| |||| ||||||||||||| |
|
|
| T |
7683111 |
gaattcgaatggtccaacttc |
7683131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 7683571 - 7683690
Alignment:
| Q |
63 |
aatgggttgatccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttt |
162 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||| ||||||||||||||||| ||||||| ||| |
|
|
| T |
7683571 |
aatgggttgatc-attaatgttcaaacctgaaaggttcttactaggtggtgagaactgtaatgttgatgtgaagggaaatgattttgaggttatactttt |
7683669 |
T |
|
| Q |
163 |
tggtgctggacgtagaatatg |
183 |
Q |
| |
|
||||| |||| |||||||||| |
|
|
| T |
7683670 |
tggtgttggatgtagaatatg |
7683690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 45481276 - 45481397
Alignment:
| Q |
107 |
ggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtagaatatgtcctgggatgagtctagggcttc |
206 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||||||||||||| |||| |||||||| || ||| |
|
|
| T |
45481276 |
ggtggtgagaagtttgatgttgatgttaggggaaatgactttgaggtgataccttttggtgctggacgtagaatatgtgctggtatgagtcttggtctta |
45481375 |
T |
|
| Q |
207 |
gtatggtccaacttctaacagc |
228 |
Q |
| |
|
| ||||| |||||||| ||||| |
|
|
| T |
45481376 |
ggatggttcaacttcttacagc |
45481397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University