View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21604_low_1 (Length: 761)
Name: NF21604_low_1
Description: NF21604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21604_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 3546762 - 3547097
Alignment:
| Q |
7 |
tccaagaatatttgatgaagttccaacaaactcttctcaatctctttagcagcatcatgtctgtcttgtatctcaaccacagtttccagaacctttcctc |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3546762 |
tccaaaaatatttgatgaagttccaacaaactcttctcaatctctttagcagcatcatgtctgtcttgtatctcaaccacagtttccagaacctttcctc |
3546861 |
T |
|
| Q |
107 |
ttccatgttcttgtattgccttccctaagaaactttcatcatctccatttgaaattatcttctcaattacctcttcatcagcatgttcccctgtcactgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3546862 |
ttccatgttcttgtattgccttccctaagaaactttcatcatctccatttgaaattatcttctcaattacctcttcatcagcatgttcccctgtcactgt |
3546961 |
T |
|
| Q |
207 |
gtaataccttctcccaactgtttctttgtattcactcatcattttctgcctaagtccctgttgtaatatacaaggtttcataaattgtgatgagtgtaat |
306 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3546962 |
gtaataccttctccctactgtttctttgtattcactcatcattttctgcctaagtccctgttgttatatacaaggtttcataaattgtgatgagtgtaat |
3547061 |
T |
|
| Q |
307 |
gttacaagatacacaacatactaaaactaaatattc |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3547062 |
gttacaagatacacaacatactaaaactaaatattc |
3547097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 422 - 744
Target Start/End: Original strand, 3547175 - 3547497
Alignment:
| Q |
422 |
gagaaattgacaagggtatctacctgaaactccatcataagctccttgagtttcttacgcaagccattagtaacagcaattctagttctataaattgctg |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3547175 |
gagaaattgacaagggtatctacctgaaactccatcataagctccttgagtttcttacgcaagccattagtaacagcaattctagttctataaattgctg |
3547274 |
T |
|
| Q |
522 |
gtgaaccatctttaagtccagagagtcttctattagcagcattagcacgatccatttcttcaagttgagtcctaatacactttgctttcttcaaaacagt |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3547275 |
gtgaaccatctttaagtccagagagtcttctattagcagcattagcacgatccatttcttcaagttgagtcctaatacactttgctttcttcaaaacagt |
3547374 |
T |
|
| Q |
622 |
cacaatatcagtattaattctttccctcaatgctttcaaagcttcagttttgtgaagactcttgctctcttcatttgcttgttcaagctttgtaagtata |
721 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3547375 |
cacaatatcagtattaattctttccctcaatgctttcaaagcttcagttttgtgaagactcttgctctcttcatttgcttgttcaagctttgttagtata |
3547474 |
T |
|
| Q |
722 |
tcacgaatttcacccatttctgt |
744 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
3547475 |
tcacgaatttcacccatttctgt |
3547497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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