View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21604_low_4 (Length: 262)
Name: NF21604_low_4
Description: NF21604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21604_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 7620200 - 7620438
Alignment:
| Q |
5 |
gttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttctt |
104 |
Q |
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| T |
7620200 |
gttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttctt |
7620299 |
T |
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| Q |
105 |
ttatcactgcttgcagataaggtaggttaggtatgtcgtcttctttcacgttcctatctcggcccacaacattgtccaattcttgctgaacttgagctaa |
204 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
7620300 |
ttatcactgcttgtaggtaaggtaggttaggtatgtcgtcttctttcacgttcctatctcgacccacaacattgtccaattcttgttgaacttgagctaa |
7620399 |
T |
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| Q |
205 |
gattcttgggtttcgaattaattctgcaatggcccattc |
243 |
Q |
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| T |
7620400 |
gattcttgggtttcgaattaattctgcaatggcccattc |
7620438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 7663692 - 7663454
Alignment:
| Q |
5 |
gttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttctt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7663692 |
gttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgtgggagggaaagaggtgttgatggatgcaagcggaaagtttctt |
7663593 |
T |
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| Q |
105 |
ttatcactgcttgcagataaggtaggttaggtatgtcgtcttctttcacgttcctatctcggcccacaacattgtccaattcttgctgaacttgagctaa |
204 |
Q |
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| T |
7663592 |
ttatcactgcttgtaggtaaggtaggttaggtatgtcgtcttctttcacgttcctatcactgcccacaactttgtctaattcttcttggactttagctag |
7663493 |
T |
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| Q |
205 |
gattcttgggtttcgaattaattctgcaatggcccattc |
243 |
Q |
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| T |
7663492 |
aattcttgggtttcgaattaattctgcaatggcccattc |
7663454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 7669389 - 7669154
Alignment:
| Q |
5 |
gttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttctt |
104 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
7669389 |
gttgaactctttggaacgtggtacccaaaaatctcacaactttcagatgcaattcgtgggagggaaagaggtgttgatgggtgcaagcgaaatgtttctt |
7669290 |
T |
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| Q |
105 |
ttatcactgcttgcagataaggtaggttaggtatgtcgtcttctttcacgttcctatctcggcccacaacattgtccaattcttgctgaacttgagctaa |
204 |
Q |
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||||||||| ||| || |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7669289 |
ttatcactgtttgtaggtaaggtaggttaggtatgtcatct--tttcacgttcctatctcggcccacaacattgtccaattcttgttgaacttgagctaa |
7669192 |
T |
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| Q |
205 |
gattcttgggtttcgaattaattctgcaatggcccatt |
242 |
Q |
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||||||||||||| || | || |||||||||||||| |
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| T |
7669191 |
gattcttgggtttttgatcatttttgcaatggcccatt |
7669154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 7682931 - 7682693
Alignment:
| Q |
5 |
gttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttctt |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
7682931 |
gttgaatcctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgtagatggatgcaagcgaaatgtttctt |
7682832 |
T |
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| Q |
105 |
ttatcactgcttgcagataaggtaggttaggtatgtcgtcttctttcacgttcctatctcggcccacaacattgtccaattcttgctgaacttgagctaa |
204 |
Q |
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||| ||||||||| || |||||||| | ||||| || ||||||||||||||||| ||||| || ||||| | || |||||||| || ||||| | | |
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| T |
7682831 |
ttaccactgcttgaaggtaaggtagttgaggtaaatcctcttctttcacgttcctgtctcgaccaacaacggtctctaattcttgttggacttgggtcat |
7682732 |
T |
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| Q |
205 |
gattcttgggtttcgaattaattctgcaatggcccattc |
243 |
Q |
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||||||| ||||| | ||||||||||| |||||||| |
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| T |
7682731 |
gattcttttatttcggagcaattctgcaatagcccattc |
7682693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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