View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21605_high_1 (Length: 390)
Name: NF21605_high_1
Description: NF21605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21605_high_1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 161 - 390
Target Start/End: Original strand, 3424489 - 3424718
Alignment:
| Q |
161 |
tagaggcaggaaggaaaatgaatgtttttcgcttccatgatggtgtgtcacactcgtaacagagtttttatggccatatcaaggttttgtgatgatggta |
260 |
Q |
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| T |
3424489 |
tagaggcaggaaggaaaatgaatgtttttcgcttccatgatggtgtgtcacattcgtaacagagtttttatggccatatcaaggttttgtgatgatggta |
3424588 |
T |
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| Q |
261 |
acaaatgttttgctgtgatttctcatcctgaaaacaggtaatggacccgtatttaaaaccttgtttatgatctaagagtgtctgacgtgtgtttatgtcc |
360 |
Q |
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| T |
3424589 |
acaaatgttttgctgtgatttctcatcctgaaaacaggtaatggacccgtatttaaaaccttgtttatgatctaagagtgtctgacgtgcgtttatgtcc |
3424688 |
T |
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| Q |
361 |
aacaagatcgacacatgtgattacatttaa |
390 |
Q |
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| T |
3424689 |
aacaagatcgacacatgtgattacatttaa |
3424718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 3424026 - 3423932
Alignment:
| Q |
19 |
actatacattgtctagataagcaatcatgtggctaacaatagcaagacatagaacttgttgattgggagaaaacaagcattatttgtgaaattgt |
113 |
Q |
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| T |
3424026 |
actatacattgtctagttaagcaatcatgtggctaacaatagcaagacatagaacttgttgaatgggagaaaacaagcattatttgtgaaattgt |
3423932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 3424139 - 3424198
Alignment:
| Q |
105 |
tgaaattgtatggtttagtcaatataatagaaggccaaccgttttttcatttactttaga |
164 |
Q |
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| T |
3424139 |
tgaaattgtatggtttagtcaatataaaagaaggccaaccgttttttcatttactttaga |
3424198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 43578845 - 43578800
Alignment:
| Q |
183 |
tgtttttcgcttccatgatggtgtgtcacactcgtaacagagtttt |
228 |
Q |
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| T |
43578845 |
tgtttttcgcttccataatggtgtgtcgcattcgtaacaaagtttt |
43578800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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