View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21605_low_1 (Length: 636)
Name: NF21605_low_1
Description: NF21605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21605_low_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 55 - 636
Target Start/End: Complemental strand, 43563758 - 43563159
Alignment:
| Q |
55 |
acatttttatatgtcgcgtcttggccaattggatagagatagcttctaaacaatccatggcaagagctacacatgttttgggcttttgtctaagcacatg |
154 |
Q |
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| T |
43563758 |
acatttttatatgtcgcgtcttggccaattggatagagatagcttctaaacaatccatggcaagagctacacatgttctgggcttttgtctcagcacatg |
43563659 |
T |
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| Q |
155 |
cacgcaaagctgaagtatcctatgagatttaaattttaatcactgctgtttaacccttggaataataagtcgatcggaagatagaatccgataaatttta |
254 |
Q |
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| T |
43563658 |
cacacaaagctaaagtatcctatgagatttaaattttaatcactgctgtttaacccttggaatgaaaagtcgatcggaagatagaatccgataaatttta |
43563559 |
T |
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| Q |
255 |
gtaaaagaagaaattgatcgaaagatatatgttccgttatgtttgtaccgtcaaaatataaatgagagggcc--------------------atcgagct |
334 |
Q |
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| T |
43563558 |
gtaaaagaagaaattgatcgaaagatat--gttccgttgagtttgtaccgtcaaaatataaatgagggggcttcgagtaaaaatagggggctatcgagct |
43563461 |
T |
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| Q |
335 |
ccactctagagattttcttgttctaggcaaaactcataagagttgaataagatgtatcttaaaaagatttaatcttacgtgttttcttaccgtcacttca |
434 |
Q |
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| T |
43563460 |
ctactctagagattttcttgttctaggcaaaactcataagagttgaatgagatatatcttaaaaagatttaatcttacatgttttcttaccgtcacttca |
43563361 |
T |
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| Q |
435 |
tgattggacatcttaccataaaaatcaaaagctactatttatagtttcaatttcaacgtgatgttttgccgtgatttcaaaacctcgtacatcgtattca |
534 |
Q |
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| T |
43563360 |
tgattggacatcttaccataaaaatcaaaagctactatttgtagcttcaacttcaacgtgatgttttaccgtgatttcaaaacctcgtacatcgtattca |
43563261 |
T |
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| Q |
535 |
aacacttgcttatatataaaagattgcaccaaatcccactttatgattgcatgtttctagcaaggtaaaactcacaatcatatgtaagagatgttttcat |
634 |
Q |
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| T |
43563260 |
aacacttacttatatataagagatcgcaccaaatcccactttatgatcgtaagtttctaccaaggtaaaactcacaatcacatgtgagagaggttttcat |
43563161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43563757 - 43563818
Alignment:
| Q |
1 |
gtggactataattgggggtattaatacttccaaatagatttctgacatgtgcaaacattttt |
62 |
Q |
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| T |
43563757 |
gtggactataattgggggtattaatacttccaaatagatttctgacatgtgcaaacattttt |
43563818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 520
Target Start/End: Complemental strand, 24140770 - 24140736
Alignment:
| Q |
486 |
ttcaacgtgatgttttgccgtgatttcaaaacctc |
520 |
Q |
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| T |
24140770 |
ttcaacgtgatgttttgccgtgatttcaaaacctc |
24140736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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