View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21605_low_3 (Length: 386)

Name: NF21605_low_3
Description: NF21605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21605_low_3
NF21605_low_3
[»] chr2 (5 HSPs)
chr2 (100-368)||(32134393-32134661)
chr2 (13-333)||(22024354-22024674)
chr2 (14-64)||(32134343-32134393)
chr2 (136-177)||(44377034-44377075)
chr2 (136-177)||(44392614-44392655)
[»] chr5 (3 HSPs)
chr5 (13-333)||(20851517-20851837)
chr5 (137-192)||(26694818-26694873)
chr5 (137-192)||(26964550-26964605)
[»] chr7 (2 HSPs)
chr7 (140-230)||(12685606-12685696)
chr7 (116-230)||(12675493-12675607)
[»] scaffold0001 (1 HSPs)
scaffold0001 (116-228)||(201499-201611)
[»] chr6 (2 HSPs)
chr6 (137-192)||(22834514-22834569)
chr6 (116-230)||(16004635-16004749)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 100 - 368
Target Start/End: Original strand, 32134393 - 32134661
Alignment:
Q  100 tatcggtttataagatgctttaatacgagccacacgatgaaaataagccgtgttcctgtccccataaataaaactctggtttctagctttttctctccaa 199  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  32134393 tatcggtttagaagatgctttaatacgagccatacgatgaaaataagccgtgtttctatccccataaataaaactctggtttctagctttttctctccaa 32134492  T
Q  200 aattcatcctggaaattcattgctctagtcagagctagctgcgtgtgtaactctaactgatgaagattagaatccaagcctgaagcatcaatcaagttct 299  Q
    |||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32134493 aattgatcctggaaattcatcgctctagtcagagctagctgcgcgtgtaactctaactgatgaagattggaatccaagcctgaagcatcaatcaagttct 32134592  T
Q  300 gaattcgggtaacctcgtcagctgccaacttgacttgattttgcacatcaccaaaaactgctttattcc 368  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32134593 gaatgcgggtaacctcgtcagctgccaacttgacttgattttgcacatcaccaaaaactgctttattcc 32134661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 22024354 - 22024674
Alignment:
Q  13 tccaagaatattatgaaagtatgtcagcacatgttcctcaatttctgtaggttccgtgattcgaacattaccatccagaagtaaagatatcggtttataa 112  Q
    ||||| |||||| ||||||||||  |||||||| | |||||| |||||||||||||| | ||| |||||||||||  |||||||||  ||||| ||  |     
T  22024354 tccaaaaatattttgaaagtatgaaagcacatgattctcaatctctgtaggttccgtaagtcgtacattaccatcatgaagtaaagtaatcggcttggag 22024453  T
Q  113 gatgctttaatacgagccacacgatgaaaataagccgtgttcctgtccccataaataaaactctggtttctagctttttctctccaaaattcatcctgga 212  Q
    || | |||||| || || ||||| ||||||||||| || ||||| |||||||| |||||||| || ||||| ||||||||||||||||||| |||||| |    
T  22024454 gaagatttaatgcgggcaacacggtgaaaataagctgtattcctatccccatagataaaactttgatttcttgctttttctctccaaaattgatcctgaa 22024553  T
Q  213 aattcattgctctagtcagagctagctgcgtgtgtaactctaactgatgaagattagaatccaagcctgaagcatcaatcaagttctgaattcgggtaac 312  Q
    ||||||| ||| | | || || ||  || |  || ||||||||    |||||||  ||||||||||| ||| |||||||||||||||||||||  |||||    
T  22024554 aattcatagcttttgccaaagttaattgagcttgcaactctaaagtgtgaagatcggaatccaagccagaaacatcaatcaagttctgaattctagtaac 22024653  T
Q  313 ctcgtcagctgccaacttgac 333  Q
    ||| ||||| |||||||||||    
T  22024654 ctcatcagccgccaacttgac 22024674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 32134343 - 32134393
Alignment:
Q  14 ccaagaatattatgaaagtatgtcagcacatgttcctcaatttctgtaggt 64  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  32134343 ccaaaaatattctgaaagtatgtcagcacatgttcctcaatttctgtaggt 32134393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 44377075 - 44377034
Alignment:
Q  136 atgaaaataagccgtgttcctgtccccataaataaaactctg 177  Q
    |||||| |||||||| ||||||||||||| ||||||||||||    
T  44377075 atgaaagtaagccgtattcctgtccccatgaataaaactctg 44377034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 44392655 - 44392614
Alignment:
Q  136 atgaaaataagccgtgttcctgtccccataaataaaactctg 177  Q
    |||||| |||||||| ||||||||||||| ||||||||||||    
T  44392655 atgaaagtaagccgtattcctgtccccatgaataaaactctg 44392614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 20851837 - 20851517
Alignment:
Q  13 tccaagaatattatgaaagtatgtcagcacatgttcctcaatttctgtaggttccgtgattcgaacattaccatccagaagtaaagatatcggtttataa 112  Q
    ||||| |||||| ||||||||||  |||||||| | |||||| |||||||||||||| | ||| |||||||||||  |||||||||  ||||| ||  |     
T  20851837 tccaaaaatattttgaaagtatgaaagcacatgattctcaatctctgtaggttccgtaagtcgtacattaccatcatgaagtaaagtaatcggcttggag 20851738  T
Q  113 gatgctttaatacgagccacacgatgaaaataagccgtgttcctgtccccataaataaaactctggtttctagctttttctctccaaaattcatcctgga 212  Q
    || | |||||| || || | ||| ||||||||||| || ||||| ||||||||||||||||| || ||||  ||||||||||||||||||| |||||| |    
T  20851737 gaagatttaatgcgggcaatacggtgaaaataagctgtattcctatccccataaataaaactttgatttcgtgctttttctctccaaaattgatcctgaa 20851638  T
Q  213 aattcattgctctagtcagagctagctgcgtgtgtaactctaactgatgaagattagaatccaagcctgaagcatcaatcaagttctgaattcgggtaac 312  Q
    ||||||| ||| | | || || ||  || |  || ||||||||    |||||||  ||||||||||| ||| |||||||||||||||||||||   ||||    
T  20851637 aattcatagcttttgccaaagttaattgagcttgcaactctaatgtgtgaagatcggaatccaagccagaaacatcaatcaagttctgaattctattaac 20851538  T
Q  313 ctcgtcagctgccaacttgac 333  Q
    ||| ||||| |||||||||||    
T  20851537 ctcatcagccgccaacttgac 20851517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 26694873 - 26694818
Alignment:
Q  137 tgaaaataagccgtgttcctgtccccataaataaaactctggtttctagctttttc 192  Q
    ||||||||||| ||||| | ||||||||||||||||||||| | |||||| |||||    
T  26694873 tgaaaataagcagtgttgcggtccccataaataaaactctgttgtctagccttttc 26694818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 26964605 - 26964550
Alignment:
Q  137 tgaaaataagccgtgttcctgtccccataaataaaactctggtttctagctttttc 192  Q
    ||||||||||| ||||| | ||||||||||||||||||||| | |||||| |||||    
T  26964605 tgaaaataagcagtgttgcggtccccataaataaaactctgttgtctagccttttc 26964550  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 12685606 - 12685696
Alignment:
Q  140 aaataagccgtgttcctgtccccataaataaaactctggtttctagctttttctctccaaaattcatcctggaaattcattgctctagtca 230  Q
    |||||||| ||||| | ||| |||| |||||||||||| ||||| ||||| || | |||||| | ||||||  ||||||||||||||||||    
T  12685606 aaataagcagtgttacggtcaccatgaataaaactctgatttcttgctttctcacgccaaaactgatcctgacaattcattgctctagtca 12685696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 12675493 - 12675607
Alignment:
Q  116 gctttaatacgagccacacgatgaaaataagccgtgttcctgtccccataaataaaactctggtttctagctttttctctccaaaattcatcctggaaat 215  Q
    |||||||||||||  | ||| || |||||||| |||||   ||| |||| ||||||||| || ||||| ||||| || | |||||| | ||||||  |||    
T  12675493 gctttaatacgagatatacggtggaaataagcagtgttaaggtcaccatgaataaaactttgatttctcgctttctcacgccaaaactgatcctgacaat 12675592  T
Q  216 tcattgctctagtca 230  Q
    |||||||||||||||    
T  12675593 tcattgctctagtca 12675607  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 201499 - 201611
Alignment:
Q  116 gctttaatacgagccacacgatgaaaataagccgtgttcctgtccccataaataaaactctggtttctagctttttctctccaaaattcatcctggaaat 215  Q
    ||||||||| |||  | |||||| |||||||| ||||| | ||| |||| ||||||||| || ||||| ||||| || | |||||| | ||||||  |||    
T  201499 gctttaatatgagatatacgatggaaataagcagtgttacggtcaccatgaataaaactttgatttctcgctttctcacgccaaaactgatcctgacaat 201598  T
Q  216 tcattgctctagt 228  Q
    |||||||||||||    
T  201599 tcattgctctagt 201611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 22834514 - 22834569
Alignment:
Q  137 tgaaaataagccgtgttcctgtccccataaataaaactctggtttctagctttttc 192  Q
    ||||||||||| ||||| | ||||||||||||||||||||| | |||||| |||||    
T  22834514 tgaaaataagcagtgttgcggtccccataaataaaactctgttgtctagccttttc 22834569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 16004635 - 16004749
Alignment:
Q  116 gctttaatacgagccacacgatgaaaataagccgtgttcctgtccccataaataaaactctggtttctagctttttctctccaaaattcatcctggaaat 215  Q
    |||||||||||||  | |||||| |||||||| ||||| | ||| || | ||||||||| || ||||| ||||| || | |||||| | |||||   |||    
T  16004635 gctttaatacgagatatacgatggaaataagcagtgttacggtcaccgtgaataaaactttgatttctcgctttctcacgccaaaactgatcctaacaat 16004734  T
Q  216 tcattgctctagtca 230  Q
    |||||||||||||||    
T  16004735 tcattgctctagtca 16004749  T

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