View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21605_low_4 (Length: 344)
Name: NF21605_low_4
Description: NF21605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21605_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 4664300 - 4663963
Alignment:
| Q |
9 |
agatgaataatatctccagcaaaggcagcatagttataatcattaccacctatctctcccaccacgaagagtgaccttttgaagtagctatcacaatctg |
108 |
Q |
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| T |
4664300 |
agatgagtaatatctccagcaaaggcagcatagttataatcattaccacctatctctcccaccacgaagagtgaccttttgaagtagctatcacaatctg |
4664201 |
T |
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| Q |
109 |
tgacatagcagaggattnnnnnnngtt--gttattggaaaatttcatacaatagtttcatttgggatggtcaatgaatgttatatgttaccttgtttagt |
206 |
Q |
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| T |
4664200 |
tgacatagcagaggattaaaaaaagttttgttattggaaaatttcatacaatggtttcatttgggatggtcaatgaatgttatatgttaccttgtttagt |
4664101 |
T |
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| Q |
207 |
tgtacaaaaggaaggtttcagcttcttaaaccagccaagctgaatgttcaatgaatgatttgtccatagcaattttcccatttctttgttgaagaattct |
306 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4664100 |
tgtacaaaaggaaggcttcagcttcttgaaccagccaagctgaatgttcaatgaatgatttgtccatagcaattttcccatttctttgttgaagaattct |
4664001 |
T |
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| Q |
307 |
acatcaagcgctgtggctccagcgactgcacaatttac |
344 |
Q |
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||| |||||||||||||||||||||||||| ||||||| |
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| T |
4664000 |
acaccaagcgctgtggctccagcgactgcaaaatttac |
4663963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 4667740 - 4667406
Alignment:
| Q |
9 |
agatgaataatatctccagcaaaggcagcatagttataatcattaccacctatctctcccaccacgaagagtgaccttttgaagtagctatcacaatctg |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
4667740 |
agatgagtaatatctccagcaaaggcagcatagttataatcattaccacctatctctcccaccacaaagagtggccttttgaagtagctatcacaatctg |
4667641 |
T |
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| Q |
109 |
tgacatagcagaggattnnnnnnng---ttgttattggaaaatttcatacaatagtttcatttgggatggtcaatgaatgttatatgttaccttgtttag |
205 |
Q |
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| T |
4667640 |
tgacatagcagaggattaaaaacaagttttgttattggaaa-tttcatacaatagtttcatttgggatggtcaatgactca---atgttaccttgtttag |
4667545 |
T |
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| Q |
206 |
ttgtacaaaaggaaggtttcagcttcttaaaccagccaagctgaatgttcaatgaatgatttgtccatagcaattttcccatttctttgttgaagaattc |
305 |
Q |
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|||| || |||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||| || | ||| |||||||||||| |
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| T |
4667544 |
ttgtgcacaaggaaggtttcagcttcttgaaccagccaagttaaatgttcaatgaatgatttgcccatagcaattttctcactccttcgttgaagaattc |
4667445 |
T |
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| Q |
306 |
tacatcaagcgctgtggctccagcgactgcacaatttac |
344 |
Q |
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||||||||| ||||||||||||||||||||| ||||||| |
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| T |
4667444 |
tacatcaagagctgtggctccagcgactgcaaaatttac |
4667406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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