View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21605_low_6 (Length: 240)
Name: NF21605_low_6
Description: NF21605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21605_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 49 - 222
Target Start/End: Complemental strand, 4663830 - 4663657
Alignment:
| Q |
49 |
taaaataaggtctactgctacaatctaaacttcaatatcgagattttctatttctctttgattaaaacacaacctcaaatgaggtcgcatcaaccacatt |
148 |
Q |
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| T |
4663830 |
taaaataaggtctattgctacaatctaaacttcaatatcgagattttctatttctctttgattaaaacacaacctcaaatgaggtcgcatcaaccacatt |
4663731 |
T |
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| Q |
149 |
tgattgtgattcttagcaatatcgtttagccacgtatatagaactacatacctatgaaatcaatcactagtcgt |
222 |
Q |
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| T |
4663730 |
tgattgtgattcttagcaatatcgtttagtcacgtatatagaactacatacctatgaaatcaatcactagtcgt |
4663657 |
T |
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Back To:
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Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4667308 - 4667078
Alignment:
| Q |
1 |
tgaaacttattaacactatataattgtcaatacatagataataggtattaaaataaggtctactgctacaatctaaacttcaatatcgagattttctatt |
100 |
Q |
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| T |
4667308 |
tgaaaattattaacactcaacaatattcaatacatagatgataggtattaaaacaaggtttacggttacaatctaacctttgatatcgagattttctatt |
4667209 |
T |
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| Q |
101 |
tctctttgattaaaacacaacctcaaatgaggtcgcatcaaccacatttgattgtgattcttagcaatatcgtttagccacgtat---------atagaa |
191 |
Q |
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| T |
4667208 |
tctctttgattaaaacacaacctcaaatgaggccgcatcaatcacatttgattttgattcttagcaatatcatttagtcacgtatatatacatcatagaa |
4667109 |
T |
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| Q |
192 |
ctacatacctatgaaatcaatcactagtcgt |
222 |
Q |
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| T |
4667108 |
ctacatacctatgaaatcaatcactagtcgt |
4667078 |
T |
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