View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21606_low_1 (Length: 446)
Name: NF21606_low_1
Description: NF21606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21606_low_1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 13457404 - 13456959
Alignment:
| Q |
1 |
ccatccatcatccatcctatgatcacacaaagtcaactcctccaacatctgacaacacttcccaatagccttaatcccatcaaaactcccttcacaccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13457404 |
ccatccatcatccatcctatgatcacacaatgtcaactcctccaacatctgacaacacttcccaatagccttaatcccatcaaaactcccttcacaccca |
13457305 |
T |
|
| Q |
101 |
caaagctcaagcttcacaagcctcttacaaccttgagccaaaatcgtcaaaccaatatccgaaacaacagaaccataaaatccctcaacattcccaacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13457304 |
caaagctcaagcttcacaagcctcttacaaccttgagccaaaatcgtcaaaccaatatccgaaacaaccgaaccataaaatccctcaacattcccaacca |
13457205 |
T |
|
| Q |
201 |
atttcaaaatctgcaaattcccacacgccgcaattccccttaacacattatcacaacacttctgcaactccaattcctgcaatgtagaacactcttcagc |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13457204 |
acttcaaaatctgcaaattcccacacgccgcaatcccccttaacacattatcactacacttctgcaactccaattcctgcaatgtagaacactcttcagc |
13457105 |
T |
|
| Q |
301 |
caaacttaacaaacccatttcactagcaccaatcacttgaacccttctcaagttaggacaaccattagctaaagcaactaacccattatcaataacctca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13457104 |
caaacttaacaaacccatttcactagcaccaatcacttgaacccttctcaaattaggacaaccattagctaaagcaactaaaccattatcaataacctca |
13457005 |
T |
|
| Q |
401 |
acaggaagcatattctcctcacagttaaaccaattcggcgacgacc |
446 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13457004 |
acaggaagcatattctcctcacaattaaaccaattcggcgacgacc |
13456959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 5 - 297
Target Start/End: Complemental strand, 1496740 - 1496448
Alignment:
| Q |
5 |
ccatcatccatcctatgatcacacaaagtcaactcctccaacatctgacaacacttcccaatagccttaatcccatcaaaactcccttcacacccacaaa |
104 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| ||||||||| ||||||| |||||| || ||||||||||| ||||| |||||||| ||| || |
|
|
| T |
1496740 |
ccatcatccatcctatgatcaacaaaaaccaactcttccaacatcaaacaacacgccccaatggctttaatcccatcgaaactaccttcacaaccaacaa |
1496641 |
T |
|
| Q |
105 |
gctcaagcttcacaagcctcttacaaccttgagccaaaatcgtcaaaccaatatccgaaacaacagaaccataaaatccctcaacattcccaaccaattt |
204 |
Q |
| |
|
|||| | ||||| | ||||||||| |||||||| ||||| ||||| |||||||||||||| ||||| ||||||| || |||||| |||||| || || |
|
|
| T |
1496640 |
gctccaatttcaccaacctcttacacccttgagctaaaatagtcaacccaatatccgaaaccacagattcataaaacccatcaacactcccaattaactt |
1496541 |
T |
|
| Q |
205 |
caaaatctgcaaattcccacacgccgcaattccccttaacacattatcacaacacttctgcaactccaattcctgcaatgtagaacactcttc |
297 |
Q |
| |
|
|| | ||||||||| ||||||||| | || | ||| |||| || |||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
1496540 |
caccacttgcaaattcttacacgccgctacaccacgtaaaacatcgtcgttacacttctgcaactccaattccatcaatgtaacacactcttc |
1496448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University