View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21606_low_2 (Length: 416)
Name: NF21606_low_2
Description: NF21606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21606_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 399
Target Start/End: Complemental strand, 10011978 - 10011596
Alignment:
| Q |
16 |
atggctccaaataatttaaatttcgaaatcagctcttccctccttaattaattgaatgaagtgtcttggaatgacaaaactctaagccttcgcactcata |
115 |
Q |
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| T |
10011978 |
atggctccaaataatttaaatttcgaaatcagctcttccctccttaattaattgaatgaagtatcttggaatgacaaaactctaagccttcccactcaga |
10011879 |
T |
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| Q |
116 |
atttatttcggtatattttccatgcacctagatacactatttgcttgcactctatgcctatatatggatgttactactcatgagtcagtaaacactcaat |
215 |
Q |
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| T |
10011878 |
atttatttcggtatattttccatgcacctagatacactatttgcctgcactctatgcctatatatggatgttactaaccatgagtcagtaaacaatcaat |
10011779 |
T |
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| Q |
216 |
acatccaaaaaccatttatattctccatggctcacatatagaccttcagacattgctttcttaccacaattaataatgtaccttggtgtactatatggaa |
315 |
Q |
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| T |
10011778 |
acatccaaaaaccatttatattctccatggctcacatatagaccttcagacgttgctttcttaccacaattaataat-taccttggtgtactatatggaa |
10011680 |
T |
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| Q |
316 |
aacatgcagttgatctatttcccacgcatgttcacacactaaaccagcatctatcataacnnnnnnnattctagctcttcttcc |
399 |
Q |
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| T |
10011679 |
aacatgcagctgatctatttcccacgcatgttcacacactaaaccagcatctatcataactttttttattctagctcttcttcc |
10011596 |
T |
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