View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21606_low_3 (Length: 350)
Name: NF21606_low_3
Description: NF21606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21606_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 134 - 333
Target Start/End: Original strand, 41132650 - 41132849
Alignment:
| Q |
134 |
gaaagccatactaaaaccatcttttctctaatatttttgccaccattcactaattctttaaattggttcagatgttcaagctgccttctataaaagctgc |
233 |
Q |
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| T |
41132650 |
gaaagccatactaaaaccatcttttctctaatatttttgccaccattcactaattctttaaattggttcagatgttcaagctgccttctataaaagctgc |
41132749 |
T |
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| Q |
234 |
cgaaattcctaatcatttcaaagtctcactatacaccaccgagagaattcgataattaaaaaagagatgatttacagtttcaaggttcccacatcctatt |
333 |
Q |
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| T |
41132750 |
cgaaattcctaatcatttcaaagtctcgctatacaccaccgagagaattcgacaattaaaaaagagatgatttacagtttcaaggttcccacatcctatt |
41132849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 41132980 - 41132848
Alignment:
| Q |
5 |
taattgtgtctatgtctctgatcgcaaagccgtagtttttctatcatgtaatgtaatgcttagggttatagagtacgaatgtaatgctacgtttaaatac |
104 |
Q |
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| T |
41132980 |
taattgtgtctatgtctctgatcgcaaagccgtagtttttctatcatgtaatgtaatgcttagggttatagagtacgaatgtaatgctacgtttaaatac |
41132881 |
T |
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| Q |
105 |
tacattcgagcgtctggtcacttgtcaacgaaa |
137 |
Q |
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| T |
41132880 |
tacattcgagcgtctggtcacttgtcaacgaaa |
41132848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 29148053 - 29148092
Alignment:
| Q |
287 |
aattaaaaaagagatgatttacagtttcaaggttcccaca |
326 |
Q |
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| T |
29148053 |
aattaaaaaagtgatgatttacagtttcaaggtttccaca |
29148092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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