View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21606_low_6 (Length: 315)
Name: NF21606_low_6
Description: NF21606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21606_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 18231013 - 18230731
Alignment:
| Q |
18 |
tgaagacatactaggagaatctgatccaaaggtcaagatagtagtactatgcaatccattggctgcattgagtttgttcttgcgacgacctgcacctaca |
117 |
Q |
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| T |
18231013 |
tgaagacatactaggagaatctgatccaaaggtcaagatagtagtactatgcaatccattggctgcattgagtttgttcttgcgacgacctgcacctaca |
18230914 |
T |
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| Q |
118 |
atcatatttctcgtggctcctccggaagtccaatacctctggcagtttttgcagaagtgtcggggctgtttgacgttgtagttgttatagtaacaaaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18230913 |
atcatatttctcgtggctcctccggaagtccaatacctctggcagtttttgcagaagtgtcggggctgtttgacgttgtagttgttatagtaacaaaatt |
18230814 |
T |
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| Q |
218 |
ttgtgtccatgcttttgcatcttggacagggaacaattacgtttggtttcattggagatttctcttgtgacatatcactttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
18230813 |
ttgtgtccatgcttttgcatcttggacagggaacaattacgtcttgtttcattggagatttctcttgtgacatatcactttgt |
18230731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 90 - 300
Target Start/End: Complemental strand, 18198315 - 18198105
Alignment:
| Q |
90 |
tttgttcttgcgacgacctgcacctacaatcatatttctcgtggctcctccggaagtccaatacctctggcagtttttgcagaagtgtcggggctgtttg |
189 |
Q |
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||||||||||||||||||||| |||| || |||||||||||||| |||||| |||||||| || || ||||| ||||||||||||||||| ||||||||| |
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| T |
18198315 |
tttgttcttgcgacgacctgcccctataagcatatttctcgtggttcctccagaagtccagtatctttggcaatttttgcagaagtgtcgaggctgtttg |
18198216 |
T |
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| Q |
190 |
acgttgtagttgttatagtaacaaaattttgtgtccatgcttttgcatcttggacagggaacaattacgtttggtttcattggagatttctcttgtgaca |
289 |
Q |
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| T |
18198215 |
acgttgtagttgttgtagtagcaaaattttgtgtccgtgcttttgcatcttggacatggaacaacttggtctggtttctttggagatttttcttgtgaca |
18198116 |
T |
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| Q |
290 |
tatcactttgt |
300 |
Q |
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||||| ||||| |
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| T |
18198115 |
tatcagtttgt |
18198105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 90 - 255
Target Start/End: Complemental strand, 18188295 - 18188130
Alignment:
| Q |
90 |
tttgttcttgcgacgacctgcacctacaatcatatttctcgtggctcctccggaagtccaatacctctggcagtttttgcagaagtgtcggggctgtttg |
189 |
Q |
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||||||||| || |||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||| |
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| T |
18188295 |
tttgttcttacggcgacctgcacctacaagcatgcttctcgtggttcctccggaagtccaatatctctgacagtttttgcagaagtgacggggctggttg |
18188196 |
T |
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| Q |
190 |
acgttgtagttgttatagtaacaaaattttgtgtccatgcttttgcatcttggacagggaacaatt |
255 |
Q |
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||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
18188195 |
gcgttgtaattattgtagtaacaaaattttgtgtccatgcttttgcatcttggacatggaagaatt |
18188130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 18193536 - 18193376
Alignment:
| Q |
90 |
tttgttcttgcgacgacctgcacctacaatcatatttctcgtggctcctccggaagtccaatacctctggcagtttttgcagaagtgtcggggctgtttg |
189 |
Q |
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|||||||||||| |||||||||||||||| |||| |||| |||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||| |
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| T |
18193536 |
tttgttcttgcggcgacctgcacctacaagcatacttctagtggttcctccggcagtccaatatctctgacagtttttgcagaagtgtcggggctggttg |
18193437 |
T |
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| Q |
190 |
acgttgtagttgttatagtaacaaaattttgtgtccatgcttttgcatcttggacagggaa |
250 |
Q |
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||||||| || || |||||||||||||||||||| | |||||||||||||||||| |||| |
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| T |
18193436 |
gcgttgtaattattgtagtaacaaaattttgtgtctacgcttttgcatcttggacatggaa |
18193376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 18188382 - 18188340
Alignment:
| Q |
18 |
tgaagacatactaggagaatctgatccaaaggtcaagatagta |
60 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
18188382 |
tgaagacatattaggagaatctgatccaaaggtcaagacagta |
18188340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 18193623 - 18193581
Alignment:
| Q |
18 |
tgaagacatactaggagaatctgatccaaaggtcaagatagta |
60 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||| |
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| T |
18193623 |
tgaagacataacaggagaatctgatccaaaggtcaagacagta |
18193581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 2823722 - 2823616
Alignment:
| Q |
124 |
tttctcgtggctcctccggaagtccaatacctctggcagtttttgcagaagtgtcggggctgtttgacgttgtagttgttatagtaacaaaattttgtgt |
223 |
Q |
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|||||| ||| ||| |||| ||||||||| ||||||||||| |||||||| || ||||| || ||||| ||||| || |||||||| || || || |||| |
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| T |
2823722 |
tttctcatggttccaccggcagtccaatatctctggcagttcttgcagaaatgacggggttggttgacattgtaattattatagtagcagaacttcgtgt |
2823623 |
T |
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| Q |
224 |
ccatgct |
230 |
Q |
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||||||| |
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| T |
2823622 |
ccatgct |
2823616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 33752086 - 33752005
Alignment:
| Q |
144 |
agtccaatacctctggcagtttttgcagaagtgtcggggctgtttgacgttgtagttgttatagtaacaaaattttgtgtcc |
225 |
Q |
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|||||||||||| |||||||| |||||||| ||||| || || ||||| || |||||||| | |||||||| || |||||| |
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| T |
33752086 |
agtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacattatagttgttgaaataacaaaacttggtgtcc |
33752005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 3775730 - 3775591
Alignment:
| Q |
91 |
ttgttcttgcgacgacctgcacctacaatcatatttctcgtggctcctccggaagtccaatacctctggcagtttttgcagaagtgtcggggctgtttga |
190 |
Q |
| |
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|||||||| | |||||| || |||||| || ||||||| ||||||| |||| |||||| || |||||||| || ||||| || || || || || || | |
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| T |
3775730 |
ttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaa |
3775631 |
T |
|
| Q |
191 |
cgttgtagttgttatagtaacaaaattttgtgtccatgct |
230 |
Q |
| |
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| T |
3775630 |
cattgtagttattgtagtagcagaatttggtgtccatgct |
3775591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 9431378 - 9431445
Alignment:
| Q |
187 |
ttgacgttgtagttgttatagtaacaaaattttgtgtccatgcttttgcatcttggacagggaacaat |
254 |
Q |
| |
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||||| ||||||||||| | ||||||||||||||||| | ||||||||||||||||| ||||||| |
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| T |
9431378 |
ttgacattgtagttgttgaaataacaaaattttgtgtcgaaacttttgcatcttggacattgaacaat |
9431445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 31771847 - 31771790
Alignment:
| Q |
181 |
ggctgtttgacgttgtagttgttatagtaacaaaattttgtgtccatgcttttgcatc |
238 |
Q |
| |
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||||| ||||| ||||| ||||| ||||||||||||| ||||||||||| ||||||| |
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| T |
31771847 |
ggctggttgacattgtaattgttgaagtaacaaaatttggtgtccatgctattgcatc |
31771790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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