View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21606_low_7 (Length: 311)

Name: NF21606_low_7
Description: NF21606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21606_low_7
NF21606_low_7
[»] chr5 (1 HSPs)
chr5 (1-297)||(40557128-40557424)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 40557128 - 40557424
Alignment:
Q  1 gaattgtctttggattatgtgcctcaaaagaaaaaagggaggaagaagatcgtcggtatgcacgtgtccgtgttggatcccaatcttatactctacaaag 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  40557128 gaattgtctttggattatgtgcctcaaaataaaaaagggaggaagaagattgttggtatgcccgtgttcgtgttggatcccaatcttatactctacaaag 40557227  T
Q  101 acatgtgcttcaagaagtggaaaatggtgactggagaggtctacattatcacaaacaaatggaacgaacttgtagcagaaaaccgtttcaaagccaagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40557228 acatgtgcttcaagaagtggaaaatggtgactggagaggtctacattatcacaaacaaatggaacgaacttgtagcagaaaaccgtttcaaagccaagaa 40557327  T
Q  201 aaaggtgcaactctggtcttttagatgccgtggtgaactctacttcgcactcgtcaagctctagccaagttctattagtcaatgatgcacatacttt 297  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40557328 aaaggtgcaactttggtcttttagatgccgtggtgaactctacttcgcactcgtcaagctctagccaagttctatcagtcaatgatgcacatacttt 40557424  T

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