View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21606_low_9 (Length: 258)
Name: NF21606_low_9
Description: NF21606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21606_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 42944256 - 42944485
Alignment:
| Q |
14 |
atattacgggcacttctgccacacaaaatggtgtagttcttatttgtagcagtggggtaccgtgtgaggaagtggtacttagtaacatagattcacattc |
113 |
Q |
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| T |
42944256 |
atattacgggcacttctgccacacaaaatggtgtagttcttatttgtagcagtggggtaccgtgtgaggaagtggtgcttagtaacatagattcacattc |
42944355 |
T |
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| Q |
114 |
aatggagttggtgtcaatgctacatgtgccaatgttgaaccaaattttttgggcaatgcacctaaatgtgaagattagaaaaccaggattcaatcttttt |
213 |
Q |
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| T |
42944356 |
aatggagttggtgtcaatgctacatgtgccaacgttgaaccaaattttttgggcaatgcacctaaatgtgaagcttagaaaaccaggattcgatcttttt |
42944455 |
T |
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| Q |
214 |
tgtttctactcaattgtgtgtttgttatgt |
243 |
Q |
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| T |
42944456 |
tgtttctactcaattgtgtgtttgttatgt |
42944485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 42893507 - 42893741
Alignment:
| Q |
10 |
aagaatattacgggcacttctgccacacaaaatggtgtagttcttatttgtagcagtggggtaccgtgtgaggaagtggtacttagtaacatagat-tca |
108 |
Q |
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|||||||||| ||||| || |||||| |||||| |||||||||||||| |||||| ||| ||||| | |||||||||||| ||||||||||||||| ||| |
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| T |
42893507 |
aagaatattatgggcatttttgccactcaaaattgtgtagttcttattcgtagcaatggtgtaccatatgaggaagtggtgcttagtaacatagatctca |
42893606 |
T |
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| Q |
109 |
cattcaatggagttggtgtcaatgctacatgtgccaatgttgaaccaaattttttgggca--atgcacctaaatgtgaagattagaaaaccaggattcaa |
206 |
Q |
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| T |
42893607 |
cattcaatggagttactgtcaatgctacatgtgccaatgttaaaccctaatttttgggcaacacacacctacatatgaagcttagacaactaggattcaa |
42893706 |
T |
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| Q |
207 |
tcttt-tttgtttctactcaattgtgtgtttgtta |
240 |
Q |
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| T |
42893707 |
tctttgtttctttctagttgattgtgtgtttgtta |
42893741 |
T |
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